BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000112.1_g0170.1
(545 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 60 2e-10
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 55 9e-09
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 53 7e-07
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 53 7e-07
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 263 EYALSVEDDEPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPLPEGKSVIGCKWV 322
+Y+L++ K I A + W AMQEE+++L +NKTW +VP P ++++GCKWV
Sbjct: 15 KYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWV 74
Query: 323 YKKKEDS 329
+K K S
Sbjct: 75 FKTKLHS 81
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 2 RLWHMSEKGLSLMCGKGLLKDMKKPCMEFCEHCVFGKAHMVSFFTSKHKSK 52
RL HMS++G+ L+ KG L K ++FCE C++GK H V+F T +H +K
Sbjct: 75 RLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTK 125
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 272 EPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDS 329
EP T+ +A +E W AM +E+ ++ TWE+ LP K IGCKWVYK K +S
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS 139
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 343 VYIKKLCEGDFIYLLLYVDDMLIASR---SSDKLKSQLNQEFEMKDMDAAKKILGMEIKR 399
Y K+ F+ +L+YVDD++I S + D+LKSQL F+++D+ K LG+EI R
Sbjct: 267 TYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326
Query: 400 ERS--NTCQ 406
+ N CQ
Sbjct: 327 SAAGINICQ 335
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 272 EPVTFKQAITAEERESWLIAMQEEMESLHKNKTWEVVPLPEGKSVIGCKWVYKKKEDS 329
EP T+ +A +E W AM +E+ ++ TWE+ LP K IGCKWVYK K +S
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS 139
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 343 VYIKKLCEGDFIYLLLYVDDMLIASR---SSDKLKSQLNQEFEMKDMDAAKKILGMEIKR 399
Y K+ F+ +L+YVDD++I S + D+LKSQL F+++D+ K LG+EI R
Sbjct: 267 TYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326
Query: 400 ERS--NTCQ 406
+ N CQ
Sbjct: 327 SAAGINICQ 335