BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000112.1_g0320.1
(683 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 115 8e-29
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 51 1e-07
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 47 3e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 115 bits (289), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 19/231 (8%)
Query: 25 SDTSRTVNPVCDE---YYV-----HPSDIGTSVVQSPALTGHDYATWAHGMHNAIVITNK 76
++T ++V+P D YY+ HPSD +Q + +Y W + + +T K
Sbjct: 2 AETIKSVSPTSDPDSPYYLPPDIHHPSDFS---IQKLSKDEDNYVAWKIRFRSFLRVTKK 58
Query: 77 QGFIDGSLPKPTDSTHLHA-WIRCDTMVKSWILNSVSPDVRSSIMHSTSTFEVWKGLKER 135
GFIDG+LPKP + L+ W +C+ MV W++NS++ + S+M++ + ++W+ L+
Sbjct: 59 FGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRV 118
Query: 136 YAKSNSPYMYQLQKFIASLRQEALTISAYFSQLKTYWDELDSLLP-PQ----SCACVIGK 190
+ +YQL++ +A+LRQ ++ YF +L W EL P P+ C C K
Sbjct: 119 FVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTK 178
Query: 191 ATIEYHHSVRTMEFLMG--LHERFSPIRSQILLMDPLPSLAKIYNMVTQEE 239
E + EFLMG L++ F + ++I+ P PSL + + MV E
Sbjct: 179 RAEEAREKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 376 HRHLLDVARALRFQAHVPLTFWGECLKTAIYLINKMPTPILSYKSPHEILYETILDYKNL 435
+R +++ R++ + +P TF + TA+++INK P+ +++ P E+ ++++ Y L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 436 RVFCCLCFGHNVNIKNKFDPRVKPG 460
R F C+ + H + K PR K G
Sbjct: 62 RRFGCVAYIH--CDEGKLKPRAKKG 84
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 55 LTGHDYATWAHGMHNAIVITNKQGFIDGSLPKPTDSTHLHAWIRCDTMVKSWILNSVSPD 114
L +Y W + G IDGS PT T W D +VK WI +++
Sbjct: 28 LNKLNYDVWRELFETLCLSFGVLGHIDGS-STPTPMTE-KRWKERDGLVKMWIYGTITDS 85
Query: 115 VRSSIMHSTSTF-EVWKGLKERYAKSNSPYMYQLQKFIASLRQEALTISAYFSQLKTYWD 173
+ +I+ T ++W L+ + + Q + + + + L++ Y +LK+ D
Sbjct: 86 LLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSD 145
Query: 174 ELDSLLPPQSCACVIGKATIEYHHSVRTMEFLMGLHERFSPIRSQILLMDPLPSLAKIYN 233
L ++ P S ++ M L GL E++ I + I P PS + +
Sbjct: 146 LLTNVDSPISDRVLV-------------MHLLNGLTEKYDYILNVIKHKSPFPSFTEARS 192
Query: 234 MVTQEEQQ 241
M+ EE +
Sbjct: 193 MLLMEESR 200