BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0010.1
(588 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 377 e-119
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 377 e-119
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 182 2e-53
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 136 3e-37
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 377 bits (967), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/578 (37%), Positives = 317/578 (54%), Gaps = 78/578 (13%)
Query: 63 SDAPAPALAVQPIHTMTTRFKVGIHRPKYLPDFVSHLSA---------------CHPLPQ 107
+D P P+ +HT R + +P YL D+ H A PL
Sbjct: 24 NDVPEPS-----VHTSHRRTR----KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYH 74
Query: 108 AFVSLLDIPPDPTTYKQASKNPAWCQAMQEEYDALQKNGTWSLVSSTPSMNIMDCKWVFK 167
+F+ + +P+TY +A + WC AM +E A++ TW + + P+ + CKWV+K
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 168 TKLKSDGSIDRYKARLVAKGFHQLDGLDYSETFSPVVKSSTIRVVLTMAVTNKWLIKQLD 227
K SDG+I+RYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L ++ + + QLD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 228 VSNAFLHGVLDEDVYMMQPPGFVDSDNSSL----VCHLHKSLYGLKQAPRASYRRFSDFL 283
+SNAFL+G LDE++YM PPG+ SL VC+L KS+YGLKQA R + +FS L
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
Query: 284 QHYGFHRSSTDHSMFVYKNRVDTLVLLLYVDDIMLTGSSSSAIQVLIDTLGLEFAMKDLG 343
+GF +S +DH+ F+ L +L+YVDDI++ ++ +A+ L L F ++DLG
Sbjct: 255 IGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
Query: 344 PLHYFLGIEVTSLPNSDLLLTQQKYTLELLQKADLLDSKPIATPIPFGKRLSTNDGVPLP 403
PL YFLG+E+ + + + + Q+KY L+LL + LL KP + P+ S + G
Sbjct: 315 PLKYFLGLEI-ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373
Query: 404 DPTLYRSLVGDLQHLTMTRPDISFGVNYVAQFMHSPTDVHLQ------------------ 445
D YR L+G L +L +TR DISF VN ++QF +P H Q
Sbjct: 374 DAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLF 433
Query: 446 -------------------------STSGYCVFLGSTLIAWSSKKQPTVARSSTEAEYKA 480
ST+GYC+FLG++LI+W SKKQ V++SS EAEY+A
Sbjct: 434 YSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493
Query: 481 LAFAFASSELLWISYVLNDLGISHSGTFELFCDNMGAKHLAMNPVFHARTKHVEIDYHFV 540
L +FA+ E++W++ +L + S LFCDN A H+A N VFH RTKH+E D H V
Sbjct: 494 L--SFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551
Query: 541 REL-VASGVLKLEFVSSSMQLADVFTKGLSNPLFRSLL 577
RE V L F + Q D FT+ LS P+ R +
Sbjct: 552 RERSVYQATLSYSFQAYDEQ--DGFTEYLS-PILRGTI 586
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 377 bits (967), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/578 (37%), Positives = 317/578 (54%), Gaps = 78/578 (13%)
Query: 63 SDAPAPALAVQPIHTMTTRFKVGIHRPKYLPDFVSHLSA---------------CHPLPQ 107
+D P P+ +HT R + +P YL D+ H A PL
Sbjct: 24 NDVPEPS-----VHTSHRRTR----KPAYLQDYYCHSVASLTIHDISQFLSYEKVSPLYH 74
Query: 108 AFVSLLDIPPDPTTYKQASKNPAWCQAMQEEYDALQKNGTWSLVSSTPSMNIMDCKWVFK 167
+F+ + +P+TY +A + WC AM +E A++ TW + + P+ + CKWV+K
Sbjct: 75 SFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYK 134
Query: 168 TKLKSDGSIDRYKARLVAKGFHQLDGLDYSETFSPVVKSSTIRVVLTMAVTNKWLIKQLD 227
K SDG+I+RYKARLVAKG+ Q +G+D+ ETFSPV K ++++++L ++ + + QLD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194
Query: 228 VSNAFLHGVLDEDVYMMQPPGFVDSDNSSL----VCHLHKSLYGLKQAPRASYRRFSDFL 283
+SNAFL+G LDE++YM PPG+ SL VC+L KS+YGLKQA R + +FS L
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTL 254
Query: 284 QHYGFHRSSTDHSMFVYKNRVDTLVLLLYVDDIMLTGSSSSAIQVLIDTLGLEFAMKDLG 343
+GF +S +DH+ F+ L +L+YVDDI++ ++ +A+ L L F ++DLG
Sbjct: 255 IGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314
Query: 344 PLHYFLGIEVTSLPNSDLLLTQQKYTLELLQKADLLDSKPIATPIPFGKRLSTNDGVPLP 403
PL YFLG+E+ + + + + Q+KY L+LL + LL KP + P+ S + G
Sbjct: 315 PLKYFLGLEI-ARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFV 373
Query: 404 DPTLYRSLVGDLQHLTMTRPDISFGVNYVAQFMHSPTDVHLQ------------------ 445
D YR L+G L +L +TR DISF VN ++QF +P H Q
Sbjct: 374 DAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLF 433
Query: 446 -------------------------STSGYCVFLGSTLIAWSSKKQPTVARSSTEAEYKA 480
ST+GYC+FLG++LI+W SKKQ V++SS EAEY+A
Sbjct: 434 YSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRA 493
Query: 481 LAFAFASSELLWISYVLNDLGISHSGTFELFCDNMGAKHLAMNPVFHARTKHVEIDYHFV 540
L +FA+ E++W++ +L + S LFCDN A H+A N VFH RTKH+E D H V
Sbjct: 494 L--SFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSV 551
Query: 541 REL-VASGVLKLEFVSSSMQLADVFTKGLSNPLFRSLL 577
RE V L F + Q D FT+ LS P+ R +
Sbjct: 552 RERSVYQATLSYSFQAYDEQ--DGFTEYLS-PILRGTI 586
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 182 bits (462), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 47/231 (20%)
Query: 307 LVLLLYVDDIMLTGSSSSAIQVLIDTLGLEFAMKDLGPLHYFLGIEVTSLPNSDLLLTQQ 366
+ LLLYVDDI+LTGSS++ + +LI L F+MKDLGP+HYFLGI++ + P S L L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHP-SGLFLSQT 59
Query: 367 KYTLELLQKADLLDSKPIATPIPFGKRLSTNDGVPLPDPTLYRSLVGDLQHLTMTRPDIS 426
KY ++L A +LD KP++TP+P K S+ PDP+ +RS+VG LQ+LT+TRPDIS
Sbjct: 60 KYAEQILNNAGMLDCKPMSTPLPL-KLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDIS 118
Query: 427 FGVNYVAQFMHSPT--DVHL---------------------------------------- 444
+ VN V Q MH PT D L
Sbjct: 119 YAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTST 178
Query: 445 -QSTSGYCVFLGSTLIAWSSKKQPTVARSSTEAEYKALAFAFASSELLWIS 494
+ST+G+C FLG +I+WS+K+QPTV+RSSTE EY+ALA A EL W S
Sbjct: 179 RRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAA--ELTWSS 227
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 136 bits (343), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 18/141 (12%)
Query: 78 MTTRFKVGIHR--PKYLPDFVSHLSACHPLPQAFVSLLDIPPDPTTYKQASKNPAWCQAM 135
M TR K GI++ PKY + I +P + A K+P WCQAM
Sbjct: 1 MLTRSKAGINKLNPKY----------------SLTITTTIKKEPKSVIFALKDPGWCQAM 44
Query: 136 QEEYDALQKNGTWSLVSSTPSMNIMDCKWVFKTKLKSDGSIDRYKARLVAKGFHQLDGLD 195
QEE DAL +N TW LV + NI+ CKWVFKTKL SDG++DR KARLVAKGFHQ +G+
Sbjct: 45 QEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIY 104
Query: 196 YSETFSPVVKSSTIRVVLTMA 216
+ ET+SPVV+++TIR +L +A
Sbjct: 105 FVETYSPVVRTATIRTILNVA 125