BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0050.1
(752 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G57790.1 | F-box family protein | Chr1:21404578-21405636 REVE... 102 3e-23
AT1G49360.4 | F-box family protein | Chr1:18267338-18268474 REVE... 79 2e-15
AT1G49360.3 | F-box family protein | Chr1:18267338-18268474 REVE... 79 2e-15
AT1G49360.2 | F-box family protein | Chr1:18267338-18268474 REVE... 79 2e-15
AT1G49360.5 | F-box family protein | Chr1:18267338-18269423 REVE... 79 4e-15
>AT1G57790.1 | F-box family protein | Chr1:21404578-21405636 REVERSE
LENGTH=352 | 201606
Length = 352
Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 147/328 (44%), Gaps = 54/328 (16%)
Query: 437 SQLLVYYRKDETIYNFVDPMRTNGKYVMELSKFLLGATIRFSKGGWLLMSR-GSVELFFF 495
S L+Y+ + + Y+F DP KY MEL K L+G +R+SK GWLLMS+ S F
Sbjct: 56 SPWLMYFPETKNTYDFYDPSNCK-KYTMELPKSLVGFIVRYSKDGWLLMSQEDSSHFVLF 114
Query: 496 NPFTRKKIKLPKFSTDVGKLSTMCFSSLPSSSDCKVFAITKHCTA-VEICAIRRGIWLRC 554
NPFT + LP F + FSS P+SS+C VF I + V I G +
Sbjct: 115 NPFTMDVVALP-FLHLFTYYQLVGFSSAPTSSECVVFTIKDYDPGHVTIRTWSPGQTMWT 173
Query: 555 SFRSTDEFFFEDVNAGRPWLENHNLRPIEDDKEFTPSLSSPVFYQGAFYCLDVNGTLGVC 614
S + +F DV +HN + VF G FYCL+ + V
Sbjct: 174 SMQVESQFL--DV--------DHN---------------NVVFSNGVFYCLNQRNHVAVF 208
Query: 615 RVGNKVAWDILSEIEIPC---NLFNQC-FLVEWEENLLALFVGNIGQTCEIYRLDFSDMK 670
+ W++L C +N+ F+V ++ ++L + + +++LD +
Sbjct: 209 DPSLR-TWNVLDVPPPRCPDDKSWNEGKFMVGYKGDILVIRTYE-NKDPLVFKLDLTRGI 266
Query: 671 WVEVESLGKHALFLSNTSCFS-AVARDMQMENKIYLSR--FLEESIIYYSLDTGKYH--- 724
W E ++LG +F+S SC S +D + N +Y + E+ + YS D G+YH
Sbjct: 267 WEEKDTLGSLTIFVSRKSCESRTYVKDGMLRNSVYFPELCYNEKQSVVYSFDEGRYHLRE 326
Query: 725 ---SVGRQHSANNFYNTKEWLACSWIEP 749
G+Q S++N WIEP
Sbjct: 327 HDLDWGKQLSSDNI----------WIEP 344
>AT1G49360.4 | F-box family protein | Chr1:18267338-18268474 REVERSE
LENGTH=378 | 201606
Length = 378
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Query: 450 YNFVDPMRTNGKYVMELSKFLLGATIRFSKGGWLLMSRG---SVELFFFNPFTRKKIKLP 506
Y F DP+ M L + + I +SK GWLLM+ +++FFNPFTR++I LP
Sbjct: 64 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 123
Query: 507 KFSTDVGKLSTMCFSSLPSSSDCKVFAITKHCTAVEICAIRRGIWLRCSFRSTDEFFFED 566
+ + FS P+ C VF I ++V AI+ W
Sbjct: 124 RNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSV---AIKISTWR-------------- 166
Query: 567 VNAGRPWLENHNLRPIEDDKEFTPS----LSSPVFYQGAFYCLDVNGTLGVCRVGNKVAW 622
WL ED PS L + ++ G FY LGV + W
Sbjct: 167 -PGATTWLH-------EDFPNLFPSYFRRLGNILYSDGLFYTAS-ETALGVFDPTAR-TW 216
Query: 623 DILSEIEIPCNLFNQCFLVEWEENLLALFVGNIGQTCEIYRLDFSDMKWVEVESLGKHAL 682
++L IP + ++ E+E ++ + ++ +YRL+ + W + E+L ++
Sbjct: 217 NVLPVQPIPMAPRSIRWMTEYEGHIFLVDASSLEPM--VYRLNRLESVWEKKETLDGSSI 274
Query: 683 FLSNTSCFSAVARDMQMENKIYL-SRFLEE 711
FLS+ SC M N +Y SRF+ E
Sbjct: 275 FLSDGSCVMTYGLTGSMSNILYFWSRFINE 304
>AT1G49360.3 | F-box family protein | Chr1:18267338-18268474 REVERSE
LENGTH=378 | 201606
Length = 378
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Query: 450 YNFVDPMRTNGKYVMELSKFLLGATIRFSKGGWLLMSRG---SVELFFFNPFTRKKIKLP 506
Y F DP+ M L + + I +SK GWLLM+ +++FFNPFTR++I LP
Sbjct: 64 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 123
Query: 507 KFSTDVGKLSTMCFSSLPSSSDCKVFAITKHCTAVEICAIRRGIWLRCSFRSTDEFFFED 566
+ + FS P+ C VF I ++V AI+ W
Sbjct: 124 RNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSV---AIKISTWR-------------- 166
Query: 567 VNAGRPWLENHNLRPIEDDKEFTPS----LSSPVFYQGAFYCLDVNGTLGVCRVGNKVAW 622
WL ED PS L + ++ G FY LGV + W
Sbjct: 167 -PGATTWLH-------EDFPNLFPSYFRRLGNILYSDGLFYTAS-ETALGVFDPTAR-TW 216
Query: 623 DILSEIEIPCNLFNQCFLVEWEENLLALFVGNIGQTCEIYRLDFSDMKWVEVESLGKHAL 682
++L IP + ++ E+E ++ + ++ +YRL+ + W + E+L ++
Sbjct: 217 NVLPVQPIPMAPRSIRWMTEYEGHIFLVDASSLEPM--VYRLNRLESVWEKKETLDGSSI 274
Query: 683 FLSNTSCFSAVARDMQMENKIYL-SRFLEE 711
FLS+ SC M N +Y SRF+ E
Sbjct: 275 FLSDGSCVMTYGLTGSMSNILYFWSRFINE 304
>AT1G49360.2 | F-box family protein | Chr1:18267338-18268474 REVERSE
LENGTH=378 | 201606
Length = 378
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Query: 450 YNFVDPMRTNGKYVMELSKFLLGATIRFSKGGWLLMSRG---SVELFFFNPFTRKKIKLP 506
Y F DP+ M L + + I +SK GWLLM+ +++FFNPFTR++I LP
Sbjct: 64 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 123
Query: 507 KFSTDVGKLSTMCFSSLPSSSDCKVFAITKHCTAVEICAIRRGIWLRCSFRSTDEFFFED 566
+ + FS P+ C VF I ++V AI+ W
Sbjct: 124 RNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSV---AIKISTWR-------------- 166
Query: 567 VNAGRPWLENHNLRPIEDDKEFTPS----LSSPVFYQGAFYCLDVNGTLGVCRVGNKVAW 622
WL ED PS L + ++ G FY LGV + W
Sbjct: 167 -PGATTWLH-------EDFPNLFPSYFRRLGNILYSDGLFYTAS-ETALGVFDPTAR-TW 216
Query: 623 DILSEIEIPCNLFNQCFLVEWEENLLALFVGNIGQTCEIYRLDFSDMKWVEVESLGKHAL 682
++L IP + ++ E+E ++ + ++ +YRL+ + W + E+L ++
Sbjct: 217 NVLPVQPIPMAPRSIRWMTEYEGHIFLVDASSLEPM--VYRLNRLESVWEKKETLDGSSI 274
Query: 683 FLSNTSCFSAVARDMQMENKIYL-SRFLEE 711
FLS+ SC M N +Y SRF+ E
Sbjct: 275 FLSDGSCVMTYGLTGSMSNILYFWSRFINE 304
>AT1G49360.5 | F-box family protein | Chr1:18267338-18269423 REVERSE
LENGTH=458 | 201606
Length = 458
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 113/270 (41%), Gaps = 37/270 (13%)
Query: 450 YNFVDPMRTNGKYVMELSKFLLGATIRFSKGGWLLMSRG---SVELFFFNPFTRKKIKLP 506
Y F DP+ M L + + I +SK GWLLM+ +++FFNPFTR++I LP
Sbjct: 144 YGFFDPVEKKKTKEMNLPELSKSSGILYSKDGWLLMNDSLSLIADMYFFNPFTRERIDLP 203
Query: 507 KFSTDVGKLSTMCFSSLPSSSDCKVFAITKHCTAVEICAIRRGIWLRCSFRSTDEFFFED 566
+ + FS P+ C VF I ++V AI+ W
Sbjct: 204 RNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSV---AIKISTWR-------------- 246
Query: 567 VNAGRPWLENHNLRPIEDDKEFTPS----LSSPVFYQGAFYCLDVNGTLGVCRVGNKVAW 622
WL ED PS L + ++ G FY LGV + W
Sbjct: 247 -PGATTWLH-------EDFPNLFPSYFRRLGNILYSDGLFYTAS-ETALGVFDPTART-W 296
Query: 623 DILSEIEIPCNLFNQCFLVEWEENLLALFVGNIGQTCEIYRLDFSDMKWVEVESLGKHAL 682
++L IP + ++ E+E ++ + ++ +YRL+ + W + E+L ++
Sbjct: 297 NVLPVQPIPMAPRSIRWMTEYEGHIFLVDASSLEPM--VYRLNRLESVWEKKETLDGSSI 354
Query: 683 FLSNTSCFSAVARDMQMENKIYL-SRFLEE 711
FLS+ SC M N +Y SRF+ E
Sbjct: 355 FLSDGSCVMTYGLTGSMSNILYFWSRFINE 384