BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0070.1
(413 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39140.1 | pseudouridine synthase family protein | Chr2:16330... 474 e-167
AT2G39140.2 | pseudouridine synthase family protein | Chr2:16330... 451 e-158
AT3G43340.1 | Pseudouridine synthase family protein | Chr3:15284... 121 8e-34
>AT2G39140.1 | pseudouridine synthase family protein |
Chr2:16330238-16333153 FORWARD LENGTH=410 | 201606
Length = 410
Score = 474 bits (1221), Expect = e-167, Method: Compositional matrix adjust.
Identities = 245/381 (64%), Positives = 285/381 (74%), Gaps = 35/381 (9%)
Query: 51 EFNISFGSDTLKSKPSSEKEEIFLPNTQSSSAP--FVIPWIVRGEDGKLQLQSTPPVSLL 108
EF+ISF K KPSS T P IPWIVR +DG L+LQS PP L+
Sbjct: 47 EFDISFAPP--KPKPSS---------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLI 95
Query: 109 HEMANSKTTSTTTKKKKKSTPTKAILTS----------------EPKFSKAARRFYNENF 152
H +A TT KK K +S +PK SKAARRFYNENF
Sbjct: 96 HNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENF 155
Query: 153 RDPPQRISKVLAAAGVSNVFSVASRRSCEELIFEGKVTVNGSICNTPQTKVDLARDSIYV 212
++ PQR+SKVLAAAGV ASRR+ EELIF+GKVTVNG +CNTPQT+VD +RD IYV
Sbjct: 156 KEQPQRLSKVLAAAGV------ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYV 209
Query: 213 NGRRISKKLPPKVYLALNKPKGYICSSGEKESKSVLSLVDDYMNTWDKRNSGVPKPRLFT 272
NG RI KKLPPKVY ALNKPKGYICSSGEKE KS +SL D+Y+++WDKRN G PKPRLFT
Sbjct: 210 NGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFT 269
Query: 273 VGRLDVATTGLIIITNDGDFAQKVSHPSSNLTKEYIAAVEGVVNKRHMVAISEGTLIEGV 332
VGRLDVATTGLI++TNDGDFAQK+SHPSS+L KEYI V G ++KRH++AISEGT++EGV
Sbjct: 270 VGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGV 329
Query: 333 RCIPDSVELLPQQPGMSRARLRIVVHEGRNHEVRELVKNAGLEIYSLKRMRIGGFRLPSD 392
C+PDSVEL+P+Q + RARLRIVVHEGRNHEVRELVKNAGLE++SLKR+RIGGFRLPSD
Sbjct: 330 HCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSD 389
Query: 393 LGLGKHIELKPGDLKSLGGGN 413
LGLGKH+ELK +LK+LG N
Sbjct: 390 LGLGKHVELKQSELKALGWKN 410
>AT2G39140.2 | pseudouridine synthase family protein |
Chr2:16330238-16332888 FORWARD LENGTH=391 | 201606
Length = 391
Score = 451 bits (1160), Expect = e-158, Method: Compositional matrix adjust.
Identities = 233/362 (64%), Positives = 270/362 (74%), Gaps = 35/362 (9%)
Query: 51 EFNISFGSDTLKSKPSSEKEEIFLPNTQSSSAP--FVIPWIVRGEDGKLQLQSTPPVSLL 108
EF+ISF K KPSS T P IPWIVR +DG L+LQS PP L+
Sbjct: 47 EFDISFAPP--KPKPSS---------THGGVTPQQLFIPWIVRSDDGTLKLQSQPPARLI 95
Query: 109 HEMANSKTTSTTTKKKKKSTPTKAILTS----------------EPKFSKAARRFYNENF 152
H +A TT KK K +S +PK SKAARRFYNENF
Sbjct: 96 HNLAIDATTQNPKKKDKSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENF 155
Query: 153 RDPPQRISKVLAAAGVSNVFSVASRRSCEELIFEGKVTVNGSICNTPQTKVDLARDSIYV 212
++ PQR+SKVLAAAGV ASRR+ EELIF+GKVTVNG +CNTPQT+VD +RD IYV
Sbjct: 156 KEQPQRLSKVLAAAGV------ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYV 209
Query: 213 NGRRISKKLPPKVYLALNKPKGYICSSGEKESKSVLSLVDDYMNTWDKRNSGVPKPRLFT 272
NG RI KKLPPKVY ALNKPKGYICSSGEKE KS +SL D+Y+++WDKRN G PKPRLFT
Sbjct: 210 NGNRIPKKLPPKVYFALNKPKGYICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFT 269
Query: 273 VGRLDVATTGLIIITNDGDFAQKVSHPSSNLTKEYIAAVEGVVNKRHMVAISEGTLIEGV 332
VGRLDVATTGLI++TNDGDFAQK+SHPSS+L KEYI V G ++KRH++AISEGT++EGV
Sbjct: 270 VGRLDVATTGLIVVTNDGDFAQKLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGV 329
Query: 333 RCIPDSVELLPQQPGMSRARLRIVVHEGRNHEVRELVKNAGLEIYSLKRMRIGGFRLPSD 392
C+PDSVEL+P+Q + RARLRIVVHEGRNHEVRELVKNAGLE++SLKR+RIGGFRLPSD
Sbjct: 330 HCVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSD 389
Query: 393 LG 394
LG
Sbjct: 390 LG 391
>AT3G43340.1 | Pseudouridine synthase family protein |
Chr3:15284861-15285851 REVERSE LENGTH=74 | 201606
Length = 74
Score = 121 bits (303), Expect = 8e-34, Method: Composition-based stats.
Identities = 55/74 (74%), Positives = 65/74 (87%)
Query: 321 VAISEGTLIEGVRCIPDSVELLPQQPGMSRARLRIVVHEGRNHEVRELVKNAGLEIYSLK 380
+AISEGT++EG+ C+PD VEL+P+Q + RA LRIVVHEGRNHEVRELVKN GLE+ SLK
Sbjct: 1 MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60
Query: 381 RMRIGGFRLPSDLG 394
R+RIGG RLPSDLG
Sbjct: 61 RVRIGGVRLPSDLG 74