BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0090.1
(733 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 427 e-136
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 427 e-136
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 189 7e-55
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 103 2e-25
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 70 3e-14
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 427 bits (1098), Expect = e-136, Method: Compositional matrix adjust.
Identities = 204/506 (40%), Positives = 323/506 (63%), Gaps = 5/506 (0%)
Query: 186 YEPDINSKAKYPISDYVSTHRLSKSFTCTMNQLSSVSIPSNLQETLSDPRWKKAMNEEMN 245
Y + S + IS ++S ++S + + ++ PS E W AM++E+
Sbjct: 48 YCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIG 107
Query: 246 ALQKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSIDRYKARLVAKGYTQTYGVDYEETF 305
A++ TWE+ P + +GC+W++ +K N DG+I+RYKARLVAKGYTQ G+D+ ETF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 306 APVAKINTIRVLISLAANQGWPLQQFDVKNAFLNGDLEEEVYMELPPGVTNSE-----VG 360
+PV K+ +++++++++A + L Q D+ NAFLNGDL+EE+YM+LPPG +
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227
Query: 361 KVCKLKKALYGLKQSPRAWFGRFTKSMKAFGYKQSNSDHTLFIKQRLGKLTALIVYVDDM 420
VC LKK++YGLKQ+ R WF +F+ ++ FG+ QS+SDHT F+K ++VYVDD+
Sbjct: 228 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDI 287
Query: 421 VVTGNDSVEMEALKNYLAQEFEMKDLGQLKYFLGIEVARSSQGIFMSQRKYILDLLVETG 480
++ N+ ++ LK+ L F+++DLG LKYFLG+E+ARS+ GI + QRKY LDLL ETG
Sbjct: 288 IICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETG 347
Query: 481 MLDCKPVNTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSHTRPDIAYSISVVSQFMH 540
+L CKP + P++ + S D Y+RL+GRL+YL TR DI+++++ +SQF
Sbjct: 348 LLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSE 407
Query: 541 NPSEEHMKAVFRILRYLKKSLGKSLLFRKGGDMEVMGYTDADWAGDVTDRRSTSGYFTFV 600
P H +AV +IL Y+K ++G+ L + +M++ ++DA + RRST+GY F+
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467
Query: 601 CGNMVTFRAKKQKVVAKSSAESELRGMAQGVCELLWIRNILKDLGFKLVKAMDLHCDNKA 660
+++++++KKQ+VV+KSSAE+E R ++ E++W+ ++L L K L CDN A
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527
Query: 661 AIMIAHNPIKHDRMKHVEVDRFFIRE 686
AI IA N + H+R KH+E D +RE
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 427 bits (1098), Expect = e-136, Method: Compositional matrix adjust.
Identities = 204/506 (40%), Positives = 323/506 (63%), Gaps = 5/506 (0%)
Query: 186 YEPDINSKAKYPISDYVSTHRLSKSFTCTMNQLSSVSIPSNLQETLSDPRWKKAMNEEMN 245
Y + S + IS ++S ++S + + ++ PS E W AM++E+
Sbjct: 48 YCHSVASLTIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIG 107
Query: 246 ALQKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSIDRYKARLVAKGYTQTYGVDYEETF 305
A++ TWE+ P + +GC+W++ +K N DG+I+RYKARLVAKGYTQ G+D+ ETF
Sbjct: 108 AMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETF 167
Query: 306 APVAKINTIRVLISLAANQGWPLQQFDVKNAFLNGDLEEEVYMELPPGVTNSE-----VG 360
+PV K+ +++++++++A + L Q D+ NAFLNGDL+EE+YM+LPPG +
Sbjct: 168 SPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPN 227
Query: 361 KVCKLKKALYGLKQSPRAWFGRFTKSMKAFGYKQSNSDHTLFIKQRLGKLTALIVYVDDM 420
VC LKK++YGLKQ+ R WF +F+ ++ FG+ QS+SDHT F+K ++VYVDD+
Sbjct: 228 AVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDI 287
Query: 421 VVTGNDSVEMEALKNYLAQEFEMKDLGQLKYFLGIEVARSSQGIFMSQRKYILDLLVETG 480
++ N+ ++ LK+ L F+++DLG LKYFLG+E+ARS+ GI + QRKY LDLL ETG
Sbjct: 288 IICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETG 347
Query: 481 MLDCKPVNTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSHTRPDIAYSISVVSQFMH 540
+L CKP + P++ + S D Y+RL+GRL+YL TR DI+++++ +SQF
Sbjct: 348 LLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSE 407
Query: 541 NPSEEHMKAVFRILRYLKKSLGKSLLFRKGGDMEVMGYTDADWAGDVTDRRSTSGYFTFV 600
P H +AV +IL Y+K ++G+ L + +M++ ++DA + RRST+GY F+
Sbjct: 408 APRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFL 467
Query: 601 CGNMVTFRAKKQKVVAKSSAESELRGMAQGVCELLWIRNILKDLGFKLVKAMDLHCDNKA 660
+++++++KKQ+VV+KSSAE+E R ++ E++W+ ++L L K L CDN A
Sbjct: 468 GTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTA 527
Query: 661 AIMIAHNPIKHDRMKHVEVDRFFIRE 686
AI IA N + H+R KH+E D +RE
Sbjct: 528 AIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 189 bits (479), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
Query: 413 LIVYVDDMVVTGNDSVEMEALKNYLAQEFEMKDLGQLKYFLGIEVARSSQGIFMSQRKYI 472
L++YVDD+++TG+ + + L L+ F MKDLG + YFLGI++ G+F+SQ KY
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 473 LDLLVETGMLDCKPVNTPIEANHHLGIFSDQVPCDKGRYQRLVGRLIYLSHTRPDIAYSI 532
+L GMLDCKP++TP+ + + + + P D ++ +VG L YL+ TRPDI+Y++
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 533 SVVSQFMHNPSEEHMKAVFRILRYLKKSLGKSLLFRKGGDMEVMGYTDADWAGDVTDRRS 592
++V Q MH P+ + R+LRY+K ++ L K + V + D+DWAG + RRS
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 593 TSGYFTFVCGNMVTFRAKKQKVVAKSSAESELRGMAQGVCELLW 636
T+G+ TF+ N++++ AK+Q V++SS E+E R +A EL W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 103 bits (258), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 67/98 (68%)
Query: 224 PSNLQETLSDPRWKKAMNEEMNALQKNSTWELVDKPHGYRIVGCRWIFTVKTNPDGSIDR 283
P ++ L DP W +AM EE++AL +N TW LV P I+GC+W+F K + DG++DR
Sbjct: 28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDR 87
Query: 284 YKARLVAKGYTQTYGVDYEETFAPVAKINTIRVLISLA 321
KARLVAKG+ Q G+ + ET++PV + TIR ++++A
Sbjct: 88 LKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 70.1 bits (170), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 52/82 (63%)
Query: 519 IYLSHTRPDIAYSISVVSQFMHNPSEEHMKAVFRILRYLKKSLGKSLLFRKGGDMEVMGY 578
+YL+ TRPD+ ++++ +SQF M+AV+++L Y+K ++G+ L + D+++ +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 579 TDADWAGDVTDRRSTSGYFTFV 600
D+DWA RRS +G+ + V
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82