BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000113.1_g0180.1
         (392 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21310.1 | extensin 3 | Chr1:7453693-7454988 REVERSE LENGTH=4...    54   2e-07

>AT1G21310.1 | extensin 3 | Chr1:7453693-7454988 REVERSE LENGTH=431
           | 201606
          Length = 431

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 168/455 (36%), Positives = 188/455 (41%), Gaps = 136/455 (29%)

Query: 1   MARLMPCLVRALAICLVASVVLADNPYTYSETPKKPVLDVEATVHTGAYSSPPPPPAYQY 60
           M   M  LV  L +  ++   ++ +   Y                   + S PPPP   Y
Sbjct: 1   MGSPMASLVATLLVLTISLTFVSQSTANY-------------------FYSSPPPPVKHY 41

Query: 61  TSPPPPPKYTPSGQEHKPLPTPAKSHHYASYEYKSPPPPPAYY----------------- 103
           T  PP   Y+P        P P K H    YEYKSPPPP  +Y                 
Sbjct: 42  T--PPVKHYSPPPVY--HSPPPPKKH----YEYKSPPPPVKHYSPPPVYHSPPPPKKHYV 93

Query: 104 YKSPPPPSPVVAP------------KYVYNSPPPPTYYYKSPPPPSPIVAPK--YVYNSP 149
           YKSPPPP    +P             YVY SPPPP  +Y  PP       PK  YVY SP
Sbjct: 94  YKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSP 153

Query: 150 PPPTYYYKSPPPPSPVVAPK--YVYNSPPPPT------------------YYYKSPPPPA 189
           PPP  +Y  PP       PK  YVY SPPPP                   Y YKSPPPP 
Sbjct: 154 PPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPV 213

Query: 190 YYYKSPPPPSPVVAPK--YVYSSPPPPTYYYKSPPPPSPVVAPK--YVYNSPPPPTYYYK 245
            +Y  PP       PK  YVY SPPPP  +Y  PP       PK  YVY SPPPP  +Y 
Sbjct: 214 KHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYS 273

Query: 246 SPPPP--------AYYYKSPPPPSPVVAP------------KYVYNSPPPPAYYYKSPPP 285
            PP           Y YKSPPPP    +P             YVY SPPPP  +Y  PP 
Sbjct: 274 PPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPV 333

Query: 286 PSPVVAPK--YVYNSPPPPT------------------YYYKSPPPPSPVVA-------- 317
                 PK  YVY SPPPP                   Y YKSPPPP    +        
Sbjct: 334 YHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSP 393

Query: 318 ----PKYIYNSPPPP--TYYSPPPPTYYYKSPPPP 346
                KY+Y SPPPP   +YSPP   Y YKSPPPP
Sbjct: 394 PPPKEKYVYKSPPPPPVHHYSPPHHPYLYKSPPPP 428


Top