BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0180.1
(392 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21310.1 | extensin 3 | Chr1:7453693-7454988 REVERSE LENGTH=4... 54 2e-07
>AT1G21310.1 | extensin 3 | Chr1:7453693-7454988 REVERSE LENGTH=431
| 201606
Length = 431
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 168/455 (36%), Positives = 188/455 (41%), Gaps = 136/455 (29%)
Query: 1 MARLMPCLVRALAICLVASVVLADNPYTYSETPKKPVLDVEATVHTGAYSSPPPPPAYQY 60
M M LV L + ++ ++ + Y + S PPPP Y
Sbjct: 1 MGSPMASLVATLLVLTISLTFVSQSTANY-------------------FYSSPPPPVKHY 41
Query: 61 TSPPPPPKYTPSGQEHKPLPTPAKSHHYASYEYKSPPPPPAYY----------------- 103
T PP Y+P P P K H YEYKSPPPP +Y
Sbjct: 42 T--PPVKHYSPPPVY--HSPPPPKKH----YEYKSPPPPVKHYSPPPVYHSPPPPKKHYV 93
Query: 104 YKSPPPPSPVVAP------------KYVYNSPPPPTYYYKSPPPPSPIVAPK--YVYNSP 149
YKSPPPP +P YVY SPPPP +Y PP PK YVY SP
Sbjct: 94 YKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSP 153
Query: 150 PPPTYYYKSPPPPSPVVAPK--YVYNSPPPPT------------------YYYKSPPPPA 189
PPP +Y PP PK YVY SPPPP Y YKSPPPP
Sbjct: 154 PPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPV 213
Query: 190 YYYKSPPPPSPVVAPK--YVYSSPPPPTYYYKSPPPPSPVVAPK--YVYNSPPPPTYYYK 245
+Y PP PK YVY SPPPP +Y PP PK YVY SPPPP +Y
Sbjct: 214 KHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYS 273
Query: 246 SPPPP--------AYYYKSPPPPSPVVAP------------KYVYNSPPPPAYYYKSPPP 285
PP Y YKSPPPP +P YVY SPPPP +Y PP
Sbjct: 274 PPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPV 333
Query: 286 PSPVVAPK--YVYNSPPPPT------------------YYYKSPPPPSPVVA-------- 317
PK YVY SPPPP Y YKSPPPP +
Sbjct: 334 YHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSP 393
Query: 318 ----PKYIYNSPPPP--TYYSPPPPTYYYKSPPPP 346
KY+Y SPPPP +YSPP Y YKSPPPP
Sbjct: 394 PPPKEKYVYKSPPPPPVHHYSPPHHPYLYKSPPPP 428