BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0230.1
(384 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 255 2e-76
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 255 2e-76
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 130 2e-35
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 57 2e-09
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 52 2e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 255 bits (652), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 220/389 (56%), Gaps = 20/389 (5%)
Query: 1 LPEGKFVIGCKWVYKKKEDSSEIKGT--RYKARLVVKGYAQKEGGDYNEIFSPLVKHNSI 58
LP K IGCKWVYK K +S GT RYKARLV KGY Q+EG D+ E FSP+ K S+
Sbjct: 120 LPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSV 176
Query: 59 RVLLSIVAHSDLELEQLNVKTAFLHGDLEEEIYMAQPEGYKVEGKE----NQVCRLRKSL 114
+++L+I A + L QL++ AFL+GDL+EEIYM P GY + N VC L+KS+
Sbjct: 177 KLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSI 236
Query: 115 YGLKQSPRQWYKRFDFFMLKHDFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMV 174
YGLKQ+ RQW+ +F ++ F +S D Y K+ F+ +L+YVDD++I S +
Sbjct: 237 YGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLFLCVLVYVDDIIICSNNDA 295
Query: 175 EIDKLKSQLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQKGYIERVVSRFRMQNAKA 234
+D+LKSQL F+++D+G K LG+EI RS+ + + Q+ Y ++ + K
Sbjct: 296 AVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQRKYALDLLDETGLLGCKP 353
Query: 235 VSTPLAPHFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGMVCTRPDISQVVSVVSRFM 294
S P+ P S D +D Y +G LMY + TR DIS V+ +S+F
Sbjct: 354 SSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFS 406
Query: 295 ANPGKTHREAVKWVLRYLMGTVDTGLCFGGDT-CQVSGFVDSDYADDLDRKRSTTGYIFR 353
P H++AV +L Y+ GTV GL + Q+ F D+ + D +RST GY
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 354 VHGARVSWRSMLQSTVALSTTEAEYMAMA 382
+ + +SW+S Q V+ S+ EAEY A++
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALS 495
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 255 bits (652), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 220/389 (56%), Gaps = 20/389 (5%)
Query: 1 LPEGKFVIGCKWVYKKKEDSSEIKGT--RYKARLVVKGYAQKEGGDYNEIFSPLVKHNSI 58
LP K IGCKWVYK K +S GT RYKARLV KGY Q+EG D+ E FSP+ K S+
Sbjct: 120 LPPNKKPIGCKWVYKIKYNS---DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSV 176
Query: 59 RVLLSIVAHSDLELEQLNVKTAFLHGDLEEEIYMAQPEGYKVEGKE----NQVCRLRKSL 114
+++L+I A + L QL++ AFL+GDL+EEIYM P GY + N VC L+KS+
Sbjct: 177 KLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSI 236
Query: 115 YGLKQSPRQWYKRFDFFMLKHDFRRSDYDCCVYIKKLREGDFIYLLLYVDDMLIASRSMV 174
YGLKQ+ RQW+ +F ++ F +S D Y K+ F+ +L+YVDD++I S +
Sbjct: 237 YGLKQASRQWFLKFSVTLIGFGFVQSHSD-HTYFLKITATLFLCVLVYVDDIIICSNNDA 295
Query: 175 EIDKLKSQLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQKGYIERVVSRFRMQNAKA 234
+D+LKSQL F+++D+G K LG+EI RS+ + + Q+ Y ++ + K
Sbjct: 296 AVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQRKYALDLLDETGLLGCKP 353
Query: 235 VSTPLAPHFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGMVCTRPDISQVVSVVSRFM 294
S P+ P S D +D Y +G LMY + TR DIS V+ +S+F
Sbjct: 354 SSVPMDPSVTFSAHSG------GDFVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFS 406
Query: 295 ANPGKTHREAVKWVLRYLMGTVDTGLCFGGDT-CQVSGFVDSDYADDLDRKRSTTGYIFR 353
P H++AV +L Y+ GTV GL + Q+ F D+ + D +RST GY
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 354 VHGARVSWRSMLQSTVALSTTEAEYMAMA 382
+ + +SW+S Q V+ S+ EAEY A++
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALS 495
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 130 bits (327), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 127/227 (55%), Gaps = 11/227 (4%)
Query: 157 IYLLLYVDDMLIASRSMVEIDKLKSQLSQEFEMKDMGAAKTILGMEIKRERSSKKLYLNQ 216
+YLLLYVDD+L+ S ++ L QLS F MKD+G LG++IK S L+L+Q
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSG--LFLSQ 58
Query: 217 KGYIERVVSRFRMQNAKAVSTPLAPHFRLSGKQSPTITVEKDHMDRVPYASAVGSLMYGM 276
Y E++++ M + K +STPL K + +++ K + D + S VG+L Y +
Sbjct: 59 TKYAEQILNNAGMLDCKPMSTPLP------LKLNSSVSTAK-YPDPSDFRSIVGALQY-L 110
Query: 277 VCTRPDISQVVSVVSRFMANPGKTHREAVKWVLRYLMGTVDTGLCFGGDT-CQVSGFVDS 335
TRPDIS V++V + M P + +K VLRY+ GT+ GL ++ V F DS
Sbjct: 111 TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDS 170
Query: 336 DYADDLDRKRSTTGYIFRVHGARVSWRSMLQSTVALSTTEAEYMAMA 382
D+A +RSTTG+ + +SW + Q TV+ S+TE EY A+A
Sbjct: 171 DWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 2 PEGKFVIGCKWVYKKKEDSSEIKGT--RYKARLVVKGYAQKEGGDYNEIFSPLVKHNSIR 59
P + ++GCKWV+K K S GT R KARLV KG+ Q+EG + E +SP+V+ +IR
Sbjct: 63 PVNQNILGCKWVFKTKLHSD---GTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119
Query: 60 VLLSI 64
+L++
Sbjct: 120 TILNV 124
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 52.4 bits (124), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 273 MYGMVCTRPDISQVVSVVSRFMANPGKTHREAVKWVLRYLMGTVDTGLCFGGDT-CQVSG 331
MY + TRPD++ V+ +S+F + +AV VL Y+ GTV GL + + Q+
Sbjct: 1 MY-LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 332 FVDSDYADDLDRKRSTTGY 350
F DSD+A D +RS TG+
Sbjct: 60 FADSDWASCPDTRRSVTGF 78