BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000113.1_g0240.1
         (668 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C...   114   3e-29
AT3G20980.1 | Gag-Pol-related retrotransposon family protein | C...    47   4e-05

>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
           ChrM:89617-90054 REVERSE LENGTH=145 | 201606
          Length = 145

 Score =  114 bits (284), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 51/114 (44%), Positives = 75/114 (65%), Gaps = 3/114 (2%)

Query: 355 GSIKVVKGSLVVMRGTRYGTLYKLLGTTVTGDVAVGISGRDPTASTRLWHMRLGHMSEKG 414
           G +KV+KG   +++G R+ +LY L G+  TG+  +  + +D    TRLWH RL HMS++G
Sbjct: 27  GVLKVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKD---ETRLWHSRLAHMSQRG 83

Query: 415 LYSMCRKGLLKDMKKPCMGFCEHCVFGKAHRVTFSTSKHRSKEVLDYVHTDVWG 468
           +  + +KG L   K   + FCE C++GK HRV FST +H +K  LDYVH+D+WG
Sbjct: 84  MELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWG 137


>AT3G20980.1 | Gag-Pol-related retrotransposon family protein |
           Chr3:7355963-7357966 FORWARD LENGTH=405 | 201606
          Length = 405

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 12/115 (10%)

Query: 247 VSEDPD---ECFSVTEMSDEISDKWMLDSEASHYMCPNRKWFTTY-RSIDGGTVIMGND- 301
           ++E PD   ECFS     + I   W++ S  S++M P+ K+FTT  RS       +  D 
Sbjct: 248 LNEVPDHVAECFSKYTFHENI---WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDK 304

Query: 302 ---NICKIVGLGTIRIKMHDGVVRTLTDVRHIPELRKNLISLGVLERNGCKIIIE 353
               +  + G+G +    ++G  +T+ +V ++P +  N +S+  L+RNG ++ +E
Sbjct: 305 SETTVAMVEGIGDVTFITNEGN-KTIKNVLYVPGIEGNALSVSQLKRNGFEVSME 358

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