BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0250.1
(825 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17440.2 | Transcription initiation factor TFIID subunit A | ... 259 3e-75
AT1G17440.1 | Transcription initiation factor TFIID subunit A | ... 259 3e-75
AT3G55320.1 | P-glycoprotein 20 | Chr3:20507391-20513393 REVERSE... 195 4e-51
AT2G39480.2 | P-glycoprotein 6 | Chr2:16478249-16483469 REVERSE ... 185 7e-48
AT2G39480.1 | P-glycoprotein 6 | Chr2:16478249-16484827 REVERSE ... 185 7e-48
>AT1G17440.2 | Transcription initiation factor TFIID subunit A |
Chr1:5984407-5987663 REVERSE LENGTH=683 | 201606
Length = 683
Score = 259 bits (661), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/205 (63%), Positives = 161/205 (78%), Gaps = 6/205 (2%)
Query: 462 SPRMLGQAVQRSISMNGSQPDTTASGTTTPGGSSSHGTEANNQFLGKRKIQDLVSQVDPQ 521
SPRML A Q+S+S+ GSQP+ T SGTTTPGGSSS GTEA NQ LGKRKIQDLVSQVD
Sbjct: 484 SPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDVH 543
Query: 522 GKLDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDLLLHLEKNLNLTIPGFTS 581
KLDP+VEDLLLE+ADDFIDSVTSFAC+LAKHRKSS LE KD+LLHLEKNL+LTIPGF+S
Sbjct: 544 AKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLHLTIPGFSS 603
Query: 582 EEQKYPRRPVMNDLHNKRLEMLRALTD-SQSDTNLSNAKDTMKQGFMHPIGVNQPISHPI 640
E+++ + V DLH KRL M+RAL + S+ +TN SN+K+TM+Q ++P G N H +
Sbjct: 604 EDKRQ-TKTVPTDLHKKRLAMVRALLESSKPETNASNSKETMRQAMVNPNGPN----HLL 658
Query: 641 RTPATSDQLVSPLAGSSMLQQLQRW 665
R +S+QLVS +G +LQ + R+
Sbjct: 659 RPSQSSEQLVSQTSGPHILQHMTRY 683
>AT1G17440.1 | Transcription initiation factor TFIID subunit A |
Chr1:5984407-5987663 REVERSE LENGTH=683 | 201606
Length = 683
Score = 259 bits (661), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 131/205 (63%), Positives = 161/205 (78%), Gaps = 6/205 (2%)
Query: 462 SPRMLGQAVQRSISMNGSQPDTTASGTTTPGGSSSHGTEANNQFLGKRKIQDLVSQVDPQ 521
SPRML A Q+S+S+ GSQP+ T SGTTTPGGSSS GTEA NQ LGKRKIQDLVSQVD
Sbjct: 484 SPRMLSHAGQKSVSLTGSQPEATQSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDVH 543
Query: 522 GKLDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDLLLHLEKNLNLTIPGFTS 581
KLDP+VEDLLLE+ADDFIDSVTSFAC+LAKHRKSS LE KD+LLHLEKNL+LTIPGF+S
Sbjct: 544 AKLDPDVEDLLLEVADDFIDSVTSFACSLAKHRKSSVLEPKDILLHLEKNLHLTIPGFSS 603
Query: 582 EEQKYPRRPVMNDLHNKRLEMLRALTD-SQSDTNLSNAKDTMKQGFMHPIGVNQPISHPI 640
E+++ + V DLH KRL M+RAL + S+ +TN SN+K+TM+Q ++P G N H +
Sbjct: 604 EDKRQ-TKTVPTDLHKKRLAMVRALLESSKPETNASNSKETMRQAMVNPNGPN----HLL 658
Query: 641 RTPATSDQLVSPLAGSSMLQQLQRW 665
R +S+QLVS +G +LQ + R+
Sbjct: 659 RPSQSSEQLVSQTSGPHILQHMTRY 683
>AT3G55320.1 | P-glycoprotein 20 | Chr3:20507391-20513393 REVERSE
LENGTH=1408 | 201606
Length = 1408
Score = 195 bits (495), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 109/131 (83%)
Query: 695 QKSLISASEINDRTPKIDQHDNNGLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKIN 754
+KSLIS EI DR P I+ DN+ LK NVYGSIELKNVDF YP R EI+++SNFSLKI+
Sbjct: 1126 RKSLISVFEIVDRVPTIEPDDNSALKPPNVYGSIELKNVDFCYPTRPEILVLSNFSLKIS 1185
Query: 755 GGQTVAVVGVSGTGENTIIYLIERFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPV 814
GGQTVAVVGVSG+G++TII L+ER+YDP G+++ DG + KL N+RWLR+HMGL+Q EP+
Sbjct: 1186 GGQTVAVVGVSGSGKSTIISLVERYYDPVAGQVLLDGRDLKLYNLRWLRSHMGLVQQEPI 1245
Query: 815 FFSTTIKENII 825
FSTTI+ENII
Sbjct: 1246 IFSTTIRENII 1256
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 718 GLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKINGGQTVAVVGVSGTGENTIIYLIE 777
G L +V G+IE +NV FSY R EI I+S F L + + VA+VG +G+G+++II L+E
Sbjct: 404 GAVLASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 463
Query: 778 RFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPVFFSTTIKENI 824
RFYDP +G ++ DG K L + WLR+ +GL+ EP S +I+ENI
Sbjct: 464 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENI 510
>AT2G39480.2 | P-glycoprotein 6 | Chr2:16478249-16483469 REVERSE
LENGTH=1227 | 201606
Length = 1227
Score = 185 bits (469), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 105/131 (80%)
Query: 695 QKSLISASEINDRTPKIDQHDNNGLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKIN 754
++SL S EI DR P I+ D + L NVYGSIELKN+DF YP R E++++SNFSLK+N
Sbjct: 945 RRSLASVFEIIDRVPTIEPDDTSALSPPNVYGSIELKNIDFCYPTRPEVLVLSNFSLKVN 1004
Query: 755 GGQTVAVVGVSGTGENTIIYLIERFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPV 814
GGQTVAVVGVSG+G++TII LIER+YDP G+++ DG + K N+RWLR+HMGLIQ EP+
Sbjct: 1005 GGQTVAVVGVSGSGKSTIISLIERYYDPVAGQVLLDGRDLKSYNLRWLRSHMGLIQQEPI 1064
Query: 815 FFSTTIKENII 825
FSTTI+ENII
Sbjct: 1065 IFSTTIRENII 1075
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 718 GLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKINGGQTVAVVGVSGTGENTIIYLIE 777
G+ L V G+IE +NV FSY R EI I+S F L + + VA+VG +G+G+++II L+E
Sbjct: 222 GIILSAVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 281
Query: 778 RFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPVFFSTTIKENI 824
RFYDP +G ++ DG K L + WLR+ +GL+ EP S +I+ENI
Sbjct: 282 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENI 328
>AT2G39480.1 | P-glycoprotein 6 | Chr2:16478249-16484827 REVERSE
LENGTH=1407 | 201606
Length = 1407
Score = 185 bits (469), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 83/131 (63%), Positives = 105/131 (80%)
Query: 695 QKSLISASEINDRTPKIDQHDNNGLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKIN 754
++SL S EI DR P I+ D + L NVYGSIELKN+DF YP R E++++SNFSLK+N
Sbjct: 1125 RRSLASVFEIIDRVPTIEPDDTSALSPPNVYGSIELKNIDFCYPTRPEVLVLSNFSLKVN 1184
Query: 755 GGQTVAVVGVSGTGENTIIYLIERFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPV 814
GGQTVAVVGVSG+G++TII LIER+YDP G+++ DG + K N+RWLR+HMGLIQ EP+
Sbjct: 1185 GGQTVAVVGVSGSGKSTIISLIERYYDPVAGQVLLDGRDLKSYNLRWLRSHMGLIQQEPI 1244
Query: 815 FFSTTIKENII 825
FSTTI+ENII
Sbjct: 1245 IFSTTIRENII 1255
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 72/107 (67%)
Query: 718 GLKLLNVYGSIELKNVDFSYPCRTEIMIMSNFSLKINGGQTVAVVGVSGTGENTIIYLIE 777
G+ L V G+IE +NV FSY R EI I+S F L + + VA+VG +G+G+++II L+E
Sbjct: 402 GIILSAVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLME 461
Query: 778 RFYDPAVGRIIFDGGERKLLNVRWLRNHMGLIQHEPVFFSTTIKENI 824
RFYDP +G ++ DG K L + WLR+ +GL+ EP S +I+ENI
Sbjct: 462 RFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRENI 508