BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0450.1
(217 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G07410.1 | RAB GTPase homolog A2B | Chr1:2276270-2277154 FORW... 372 e-132
AT3G46830.2 | RAB GTPase homolog A2C | Chr3:17246699-17248362 RE... 350 e-124
AT3G46830.1 | RAB GTPase homolog A2C | Chr3:17246699-17248362 RE... 350 e-124
AT5G59150.1 | RAB GTPase homolog A2D | Chr5:23876858-23878244 FO... 347 e-123
AT1G09630.1 | RAB GTPase 11C | Chr1:3118350-3119571 REVERSE LENG... 334 e-118
>AT1G07410.1 | RAB GTPase homolog A2B | Chr1:2276270-2277154 FORWARD
LENGTH=214 | 201606
Length = 214
Score = 372 bits (954), Expect = e-132, Method: Compositional matrix adjust.
Identities = 181/217 (83%), Positives = 196/217 (90%), Gaps = 3/217 (1%)
Query: 1 MSYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATKTLQVDGKV 60
M+ R+DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFAT+TLQV+GK
Sbjct: 1 MANRIDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELREHADSNIVI 120
VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENV RWLRELR+HADSNIVI
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVI 120
Query: 121 MMAGNKSDLKHLRAVAEEDAFVLAEKEELSFLETSALEAVNVEKAFQTILTDIYHVISKK 180
MMAGNKSDL HLR+VA+ED LAEKE LSFLETSALEA N+EKAFQTIL++IYH+ISKK
Sbjct: 121 MMAGNKSDLNHLRSVADEDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHIISKK 180
Query: 181 ALAAQESASTTGLPGHGTTINVGASSGNLDKKNCCST 217
ALAAQE+A LPG GT IN+ SS ++K CCST
Sbjct: 181 ALAAQEAAGN--LPGQGTAINISDSSAT-NRKGCCST 214
>AT3G46830.2 | RAB GTPase homolog A2C | Chr3:17246699-17248362
REVERSE LENGTH=217 | 201606
Length = 217
Score = 350 bits (899), Expect = e-124, Method: Compositional matrix adjust.
Identities = 175/218 (80%), Positives = 193/218 (88%), Gaps = 2/218 (0%)
Query: 1 MSYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATKTLQVDGKV 60
M++RVD EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFAT+T QV+GK
Sbjct: 1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT 60
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELREHADSNIVI 120
+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NV RWLRELR+HADSNIVI
Sbjct: 61 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120
Query: 121 MMAGNKSDLKHLRAVAEEDAFVLAEKEELSFLETSALEAVNVEKAFQTILTDIYHVISKK 180
MMAGNKSDL HLR+VAEED LAEKE LSFLETSALEA NVEKAFQTIL +IYH+ISKK
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKK 180
Query: 181 -ALAAQESASTTGLPGHGTTINVGASSGNLDKKNCCST 217
A + +A+ + +PG GTTINV +SG K+ CCS+
Sbjct: 181 ALAAQEAAAANSAIPGQGTTINVDDTSGGA-KRACCSS 217
>AT3G46830.1 | RAB GTPase homolog A2C | Chr3:17246699-17248362
REVERSE LENGTH=217 | 201606
Length = 217
Score = 350 bits (899), Expect = e-124, Method: Compositional matrix adjust.
Identities = 175/218 (80%), Positives = 193/218 (88%), Gaps = 2/218 (0%)
Query: 1 MSYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATKTLQVDGKV 60
M++RVD EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFAT+T QV+GK
Sbjct: 1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKT 60
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELREHADSNIVI 120
+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NV RWLRELR+HADSNIVI
Sbjct: 61 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120
Query: 121 MMAGNKSDLKHLRAVAEEDAFVLAEKEELSFLETSALEAVNVEKAFQTILTDIYHVISKK 180
MMAGNKSDL HLR+VAEED LAEKE LSFLETSALEA NVEKAFQTIL +IYH+ISKK
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKK 180
Query: 181 -ALAAQESASTTGLPGHGTTINVGASSGNLDKKNCCST 217
A + +A+ + +PG GTTINV +SG K+ CCS+
Sbjct: 181 ALAAQEAAAANSAIPGQGTTINVDDTSGGA-KRACCSS 217
>AT5G59150.1 | RAB GTPase homolog A2D | Chr5:23876858-23878244
FORWARD LENGTH=217 | 201606
Length = 217
Score = 347 bits (890), Expect = e-123, Method: Compositional matrix adjust.
Identities = 172/218 (78%), Positives = 193/218 (88%), Gaps = 2/218 (0%)
Query: 1 MSYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATKTLQVDGKV 60
M++RV+ +YDYLFKIVLIGDSGVGK+NILSRFTRNEFCLESKSTIGVEFAT+TLQV+GK
Sbjct: 1 MAHRVEQDYDYLFKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 60
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELREHADSNIVI 120
VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF+NV RWLRELR+HADSNIVI
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVI 120
Query: 121 MMAGNKSDLKHLRAVAEEDAFVLAEKEELSFLETSALEAVNVEKAFQTILTDIYHVISKK 180
MMAGNK+DL HLR+VAEED LAE E LSFLETSALEA NVEKAFQT+L +IYH+ISKK
Sbjct: 121 MMAGNKADLNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHIISKK 180
Query: 181 -ALAAQESASTTGLPGHGTTINVGASSGNLDKKNCCST 217
A + +A+ + +PG GTTINV +SG K+ CCST
Sbjct: 181 ALAAQEAAAANSAIPGQGTTINVEDTSG-AGKRGCCST 217
>AT1G09630.1 | RAB GTPase 11C | Chr1:3118350-3119571 REVERSE
LENGTH=217 | 201606
Length = 217
Score = 334 bits (857), Expect = e-118, Method: Compositional matrix adjust.
Identities = 159/217 (73%), Positives = 189/217 (87%), Gaps = 1/217 (0%)
Query: 1 MSYRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATKTLQVDGKV 60
M+ R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFAT+TLQV+G+
Sbjct: 1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 60
Query: 61 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFENVQRWLRELREHADSNIVI 120
VKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK TFENV RWL+ELR+HADSNIVI
Sbjct: 61 VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVI 120
Query: 121 MMAGNKSDLKHLRAVAEEDAFVLAEKEELSFLETSALEAVNVEKAFQTILTDIYHVISKK 180
M+ GNK+DLKHLRAVA EDA AEKE LSF+ETSALEA+NVEKAFQTIL+++Y +ISKK
Sbjct: 121 MLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKK 180
Query: 181 ALAAQESASTTGLPGHGTTINVGASSGNLDKKNCCST 217
++++ ++ + + G TI+V A+S + KK CCS+
Sbjct: 181 SISSDQTTANANIK-EGQTIDVAATSESNAKKPCCSS 216