BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0490.1
(213 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 72 2e-14
AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 60 6e-11
AT2G33160.1 | glycoside hydrolase family 28 protein / polygalact... 61 9e-11
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 56 4e-09
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 54 2e-08
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 71.6 bits (174), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 62 WRPPSTPYLKINIDASFINLNERAGIGCIIRDADANYVIAAADSVRSQHAECESMTILSG 121
WRPP ++K N DA++ NER GIG ++R+ A ++ + E+ L
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE--LEA 477
Query: 122 LLWAI----QLQISHVHLESDNQALILFLNGNSVGFHWQSQR-VIQQIIDIKDKFKGLIF 176
+ WA+ + Q ++V ESD+Q LI LN + + W S + IQ + + +F + F
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQFTEVKF 534
Query: 177 SHVPRECNTQADAIAKWGRKYCH--KKIWNVVPSF 209
+PRE NT A+ +A+ + + K++++VPS+
Sbjct: 535 VFIPREGNTLAERVARESLSFLNYDPKLYSIVPSW 569
>AT1G27870.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr1:9706657-9707298 REVERSE
LENGTH=213 | 201606
Length = 213
Score = 60.1 bits (144), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
Query: 56 ETKVQTWRPPSTPYLKINIDASFINLNERAGIGCIIRDADANYVIAAADSVRSQHAECES 115
E WR P ++K N D SF+N + ++ G ++RD++ +Y++A R ES
Sbjct: 46 EDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAGQAIGRKVDNALES 105
Query: 116 MTILSGLLWAIQLQISH----VHLESDNQALILFLNGNSVGFHWQSQRVIQQIIDIKDKF 171
+ L+ ++Q SH V E DN+ L +NG+ V F I+ I KF
Sbjct: 106 E--IQALIISMQHCWSHGYKRVCFEGDNKMLFDLINGSKVYF--GVHNWIRDIHWWLRKF 161
Query: 172 KGLIFSHVPRECNTQADAIAK 192
+ + F+ + R NT AD +AK
Sbjct: 162 ESIHFNWIRRHHNTPADILAK 182
>AT2G33160.1 | glycoside hydrolase family 28 protein /
polygalacturonase (pectinase) family protein |
Chr2:14053404-14056246 FORWARD LENGTH=664 | 201606
Length = 664
Score = 61.2 bits (147), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Query: 48 VSPHPSQLETKVQTWRPPSTPYLKINIDASFINLNERAGIGCIIRDADANYVIA--AADS 105
++ H + + + + WR P+ ++K N+D SFIN N G I+RD + Y A A +
Sbjct: 489 INSHGTTIRSHIPNWRRPTNGWVKCNVDGSFINGNIPGKGGWIVRDHNGRYEFAGQAIGN 548
Query: 106 VRSQHAECESMTILSGLLWAIQLQISHVHLESDNQALILFLNGNSVGFHWQSQRVIQQII 165
ECE +L + + E DN+ + +NG + H+ + I+ I+
Sbjct: 549 CIDNALECEFQALLMAMQHCWSKGYRRICFEGDNKEMFDLING--LKMHFGAFNWIRDIL 606
Query: 166 DIKDKFKGLIFSHVPRECNTQADAIAK 192
KF+ F R+ N AD +A+
Sbjct: 607 WWASKFEQTQFQWTNRQNNKPADILAR 633
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 62 WRPPSTPYLKINIDASFINLNERAGIGCIIRDADANYVIAAADSVRSQHAECESMTILSG 121
W+ P ++K N DA++ N R GIG I+R+ + A ++ E+ L
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAE--LEA 194
Query: 122 LLWAI----QLQISHVHLESDNQALILFLNGNSVGFHWQS-QRVIQQIIDIKDKFKGLIF 176
L WA+ + + ESD QAL+ LN + W + Q ++ I + F+ + F
Sbjct: 195 LRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDF---WPTLQPALEDIQQLLHHFEEVKF 251
Query: 177 SHVPRECNTQADAIAKWGRKYCH--KKIWNVVPSFI 210
PR N AD IA+ + + K++++VP ++
Sbjct: 252 EFTPRGGNKVADRIARESISFSNYDPKLFSIVPQWL 287
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 49 SPHPSQ--LETKVQTWRPPSTPYLKINIDASFINLNERAGIGCIIRDADANYVIAAADSV 106
+P P++ E K++ WR P Y+K N DA F A G IIR+ + + +
Sbjct: 312 TPSPTRQIAENKIE-WRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKL 370
Query: 107 --RSQHAECESMTILSGLLWAIQLQISHVHLESDNQALILFLNGNSVGFHWQSQRVIQQI 164
S E E+ +L+ L + V +E D Q LI +NG + FH ++ I
Sbjct: 371 AHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLING--ISFHSSLANHLEDI 428
Query: 165 IDIKDKFKGLIFSHVPRECNTQADAIAKWGRKY 197
+KF + F + R+ N A +AK+G Y
Sbjct: 429 SFWANKFASIQFGFIRRKGNKLAHVLAKYGCTY 461