BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0680.1
(469 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 223 1e-63
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 223 1e-63
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 99 5e-24
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 100 8e-24
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 50 2e-07
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 223 bits (567), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 195/408 (47%), Gaps = 104/408 (25%)
Query: 129 HRSRRPPPHLKDYVCTAITSPNPKVDHPLTKFINFNSLSTQHRIFLTSVISNTEPRSYSQ 188
HR R P +L+DY C ++ S H +++F+++ +S + FL + EP +Y++
Sbjct: 35 HRRTRKPAYLQDYYCHSVASLTI---HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNE 91
Query: 189 AMQSPHWREAMAKEISALESNNTWSLVPLPHGKRPIGCKWVYKIKHRSNGSIERYKARLV 248
A + W AM EI A+E+ +TW + LP K+PIGCKWVYKIK+ S+G+IERYKARLV
Sbjct: 92 AKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLV 151
Query: 249 TKGYTQIEGLDYNDTFPPVAKLVSGGALLSIAAIRGWSLHQLDVNNAFLQDDV------- 301
KGYTQ EG+D+ +TF PV KL S +L+I+AI ++LHQLD++NAFL D+
Sbjct: 152 AKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMK 211
Query: 302 -----------------------AIFTLKS-----FLDRTFSLKDLGNLQ------YFLG 327
+I+ LK FL + +L G +Q YFL
Sbjct: 212 LPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLK 271
Query: 328 IEVSRSSKGIFLCQRRYTLDILEDS-----------------------------GLTASR 358
I + +FLC Y DI+ S GL +R
Sbjct: 272 ITAT-----LFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326
Query: 359 --------------------------PSPFPMDQKLRLGPTDGSPLPDPSIYRRLIGRLI 392
PS PMD + G D YRRLIGRL+
Sbjct: 327 SAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLM 386
Query: 393 YLTVTRPDITYAVNNLSQFMQNPHTSHLDAAHRVLNILKVLLDMAYFF 440
YL +TR DI++AVN LSQF + P +H A ++L+ +K + F+
Sbjct: 387 YLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY 434
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 223 bits (567), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/408 (33%), Positives = 195/408 (47%), Gaps = 104/408 (25%)
Query: 129 HRSRRPPPHLKDYVCTAITSPNPKVDHPLTKFINFNSLSTQHRIFLTSVISNTEPRSYSQ 188
HR R P +L+DY C ++ S H +++F+++ +S + FL + EP +Y++
Sbjct: 35 HRRTRKPAYLQDYYCHSVASLTI---HDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNE 91
Query: 189 AMQSPHWREAMAKEISALESNNTWSLVPLPHGKRPIGCKWVYKIKHRSNGSIERYKARLV 248
A + W AM EI A+E+ +TW + LP K+PIGCKWVYKIK+ S+G+IERYKARLV
Sbjct: 92 AKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLV 151
Query: 249 TKGYTQIEGLDYNDTFPPVAKLVSGGALLSIAAIRGWSLHQLDVNNAFLQDDV------- 301
KGYTQ EG+D+ +TF PV KL S +L+I+AI ++LHQLD++NAFL D+
Sbjct: 152 AKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMK 211
Query: 302 -----------------------AIFTLKS-----FLDRTFSLKDLGNLQ------YFLG 327
+I+ LK FL + +L G +Q YFL
Sbjct: 212 LPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLK 271
Query: 328 IEVSRSSKGIFLCQRRYTLDILEDS-----------------------------GLTASR 358
I + +FLC Y DI+ S GL +R
Sbjct: 272 ITAT-----LFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIAR 326
Query: 359 --------------------------PSPFPMDQKLRLGPTDGSPLPDPSIYRRLIGRLI 392
PS PMD + G D YRRLIGRL+
Sbjct: 327 SAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLM 386
Query: 393 YLTVTRPDITYAVNNLSQFMQNPHTSHLDAAHRVLNILKVLLDMAYFF 440
YL +TR DI++AVN LSQF + P +H A ++L+ +K + F+
Sbjct: 387 YLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFY 434
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 98.6 bits (244), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 8/134 (5%)
Query: 162 NFNSLSTQHRIFLTSVISNTEPRSYSQAMQSPHWREAMAKEISALESNNTWSLVPLPHGK 221
N L+ ++ + +T+ I EP+S A++ P W +AM +E+ AL N TW LVP P +
Sbjct: 8 GINKLNPKYSLTITTTIKK-EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQ 66
Query: 222 RPIGCKWVYKIKHRSNGSIERYKARLVTKGYTQIEGLDYNDTFPPVAKLVSGGALLSIAA 281
+GCKWV+K K S+G+++R KARLV KG+ Q EG+ + +T+ PV + + +L++A
Sbjct: 67 NILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA- 125
Query: 282 IRGWSLHQLDVNNA 295
QL+V +
Sbjct: 126 ------QQLEVGQS 133
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 100 bits (248), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Query: 300 DVAIFTLKSFLDRTFSLKDLGNLQYFLGIEVSRSSKGIFLCQRRYTLDILEDSGLTASRP 359
++ IF L S TFS+KDLG + YFLGI++ G+FL Q +Y IL ++G+ +P
Sbjct: 21 NMLIFQLSS----TFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKP 76
Query: 360 SPFPMDQKLRLGPTDGSPLPDPSIYRRLIGRLIYLTVTRPDITYAVNNLSQFMQNPHTSH 419
P+ KL + PDPS +R ++G L YLT+TRPDI+YAVN + Q M P +
Sbjct: 77 MSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLAD 135
Query: 420 LDAAHRVLNILK 431
D RVL +K
Sbjct: 136 FDLLKRVLRYVK 147
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%)
Query: 392 IYLTVTRPDITYAVNNLSQFMQNPHTSHLDAAHRVLNILKVLLDMAYFF 440
+YLT+TRPD+T+AVN LSQF T+ + A ++VL+ +K + F+
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFY 49