BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0750.1
(533 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 108 8e-25
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 82 4e-16
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 73 8e-14
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 57 4e-08
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 57 4e-08
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 108 bits (271), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/379 (23%), Positives = 161/379 (42%), Gaps = 49/379 (12%)
Query: 101 THFMGLALRPQGTLNHLEKLERNFWWHHNDNERKMHFLPWEILQKPKELGG--------- 151
T+ M L P+ + + +FWW + + MH+ W+ L K GG
Sbjct: 5 TYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAF 64
Query: 152 ------------------LCAKIISAKYYRSDAFWDAQNKSNVTPLWKALIQVKDTLRGR 193
L AK+ ++Y+ +A S + +WK++ ++ LR
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 194 CCWQVGDGSTLKISQDPWIPNAPSFKPLFLEQLPENIYW-------VSGFIDHSSNSWKM 246
VG+G + I + W+ + P+ L ++++P Y VS ID S W+
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 247 DIIQRYCTEESAKAISEINLSRLMVVDRLIWGPTENGQFTTKSFFKEISSHLPNARA--- 303
D+I+ E K I E+ ++D W T +G +T KS + + + + N R+
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY-WVLTQIINKRSSPQ 243
Query: 304 KADFP-----WSKLWKITSVEPKVIHFIWKLVNKGLSLLTSIEKGNMQISTTCRLCNQER 358
+ P + K+WK + PK+ HF+WK ++ L + ++ ++ + C C +
Sbjct: 244 EVSEPSLNPIYQKIWK-SQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK 302
Query: 359 ETTNHLFHGCTKFVELWNLAQHHHL--GTWEESPEQLIRNLILRNKSNP---KKTKYYFY 413
ET NHL CT W ++ G W +S + + NP K ++ +
Sbjct: 303 ETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPW 362
Query: 414 LISLFWKARNDLIFKNKQF 432
L+ WK RN+L+F+ ++F
Sbjct: 363 LLWRLWKNRNELVFRGREF 381
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 174/416 (41%), Gaps = 54/416 (12%)
Query: 157 ISAKYYRSDAFWDAQNKSNVTPLWKALIQVKDTLRGRCCWQVGDGSTLKISQDPWIPNAP 216
+ A+Y++ + DA+ + + W +L+ L+ +GDG ++I D + + P
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 217 SFKPLFLEQLPENIYWVSGFIDHSSNS-WKMDIIQRYCTEESAKAISEINLSRLMVVDRL 275
+PL E+ + + + F S W I ++ + I I L++ D++
Sbjct: 61 P-RPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 119
Query: 276 IWGPTENGQFTTKSFFKEISSHLPNARAKADFP-------WSKLWKITSVEPKVIHFIWK 328
IW G++T +S + + +H P+ A P +++W + + PK+ HF+W+
Sbjct: 120 IWNYNTTGEYTVRSGY-WLLTHDPSTNIPAINPPHGSIDLKTRIWNL-PIMPKLKHFLWR 177
Query: 329 LVNKGLSLLTSIEKGNMQISTTCRLCNQERETTNHLFHGCTKFVELWNLAQHHHLGTWEE 388
+++ L+ + M+I +C C++E E+ NH C W L
Sbjct: 178 ALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRL----------- 226
Query: 389 SPEQLIRNLILRNK------------SNPKKTKYY----FYLISLFWKARNDLIFKNKQF 432
S LIRN ++ N + + ++ +LI WKARN+++F NK
Sbjct: 227 SDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVVF-NKFR 285
Query: 433 RLPSIHLQAFKASNNDLTVSSDD----------LIQDVLMQR--PMDAVMVFFDGSFGNN 480
PS + + KA +D ++ + ++ + R P V FD F
Sbjct: 286 ESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQ 345
Query: 481 C--APRGLVIRNGNGEVFIQTGKRISSNS-IVESEGKTLLEAATLVRELGFLKAYL 533
A G +IRN G +++ S +E+E K LL A G+ + ++
Sbjct: 346 KLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFM 401
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 38/252 (15%)
Query: 310 SKLWKITSVEPKVIHFIWKLVNKGLSLLTSIEKGNMQISTTCRLCNQERETTNHLFHGCT 369
+K+WK+ + PK+ HF+WKL++ L+ ++++ +++ C C QE ET+ HLF C
Sbjct: 16 AKIWKLKTA-PKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCF 74
Query: 370 KFVELWNLA--QHHHL---GTWEESPEQLIRNLILRNKSNPKKTKYYFYLISLFWKARND 424
++W + H L G E+ +L+ + L N+ P+ +++ WK+RN
Sbjct: 75 YAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQ-PQLFNLAIWILWRLWKSRNQ 133
Query: 425 LIFKNKQFRLPSIHLQ-AFKASNNDLTVSSD------DLIQDVLMQRPMDAVMVF----- 472
L+F+ K SI Q + + ND+ D L Q V R M
Sbjct: 134 LVFQQK-----SISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQR 188
Query: 473 ---------FDGSFGNNC--APRGLVIRNGNGEVFIQTGKRISSNS--IVESEGKTLLEA 519
+DG+F + A G ++R+ NG V++ +G+ I S + +ESE + L+ A
Sbjct: 189 PPSTWIKYNYDGAFNHQTRNAKAGWLMRDENG-VYMGSGQAIGSTTSDSLESEFQALIIA 247
Query: 520 ATLVRELGFLKA 531
G+ K
Sbjct: 248 MQHAWSQGYRKV 259
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/460 (19%), Positives = 160/460 (34%), Gaps = 54/460 (11%)
Query: 5 YTSYSGQLVNFAKSSLYFSMGVPPAIWDLFTSQLQAPIMEQS--EKYLGTPILKPNYRIQ 62
+ +SG ++ KS++Y + D+ S P + +YLG P+L
Sbjct: 38 FADFSGLQISLEKSTIYMAGVKDNDKADILHS---FPFASGALPVRYLGLPLLTKKMTTS 94
Query: 63 SHSFLTQKFSKRLAGKKRKFISQAGRTTLIKGALGPICTHFMGLALRPQGTLNHLEKLER 122
+ L +K R+ + +S AGR LI + + +M P + ++ +
Sbjct: 95 DYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICS 154
Query: 123 NFWWHHNDNERKMHFLPWEILQKPKELGGLCAKIISAK---------------------- 160
+F W + K + W + PK+ GGL + +
Sbjct: 155 SFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQW 214
Query: 161 ----YYRSDAFWDAQNKSNVTP-LWKALIQVKDTLRGRCCWQVGDGSTLKISQDPW---- 211
R +FW + + +WK +++ + G + +GS D W
Sbjct: 215 LRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIG 274
Query: 212 -IPNAPSFKPLFLEQLPENIYWVSGFIDHSSNSWKMDIIQRYCTEESAKAISEINLSRLM 270
+ + + + + ++H + D + R I+E+ L
Sbjct: 275 RLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI-----EDVIAEVRHQGLT 329
Query: 271 V-VDRLIWGPTENGQFTTKSFFKEISSHLPNARAKADFPWSKLWKITSVEPKVIHFIWKL 329
D + W NG K F + K W K + PK W
Sbjct: 330 SGEDTVRW--KGNGDI-FKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIA 386
Query: 330 VNKGLSLLTSIEKGNMQISTTCRLCNQERETTNHLFHGCTKFVELWN-----LAQHHHLG 384
+ L+ + N ++C LC+ ET +HLF C E+W+ L H
Sbjct: 387 IKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTN 446
Query: 385 TWEESPEQLIRNLILRNKSNPKKTKYYFYL-ISLFWKARN 423
W E+ +L+ N L ++ P T+Y F L + WK RN
Sbjct: 447 RW-EAILKLLTNKSLGHEV-PFLTRYTFQLTLHSLWKERN 484
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 90/460 (19%), Positives = 160/460 (34%), Gaps = 54/460 (11%)
Query: 5 YTSYSGQLVNFAKSSLYFSMGVPPAIWDLFTSQLQAPIMEQS--EKYLGTPILKPNYRIQ 62
+ +SG ++ KS++Y + D+ S P + +YLG P+L
Sbjct: 38 FADFSGLQISLEKSTIYMAGVKDNDKADILHS---FPFASGALPVRYLGLPLLTKKMTTS 94
Query: 63 SHSFLTQKFSKRLAGKKRKFISQAGRTTLIKGALGPICTHFMGLALRPQGTLNHLEKLER 122
+ L +K R+ + +S AGR LI + + +M P + ++ +
Sbjct: 95 DYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICS 154
Query: 123 NFWWHHNDNERKMHFLPWEILQKPKELGGLCAKIISAK---------------------- 160
+F W + K + W + PK+ GGL + +
Sbjct: 155 SFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLSSTSLWVQW 214
Query: 161 ----YYRSDAFWDAQNKSNVTP-LWKALIQVKDTLRGRCCWQVGDGSTLKISQDPW---- 211
R +FW + + +WK +++ + G + +GS D W
Sbjct: 215 LRLYLLRKGSFWSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFDNWSKIG 274
Query: 212 -IPNAPSFKPLFLEQLPENIYWVSGFIDHSSNSWKMDIIQRYCTEESAKAISEINLSRLM 270
+ + + + + ++H + D + R I+E+ L
Sbjct: 275 RLIDVTGHRGCIDMGITLHASVAEAVVNHRPRRHRHDTLLRI-----EDVIAEVRHQGLT 329
Query: 271 V-VDRLIWGPTENGQFTTKSFFKEISSHLPNARAKADFPWSKLWKITSVEPKVIHFIWKL 329
D + W NG K F + K W K + PK W
Sbjct: 330 SGEDTVRW--KGNGDI-FKPCFNTKETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIA 386
Query: 330 VNKGLSLLTSIEKGNMQISTTCRLCNQERETTNHLFHGCTKFVELWN-----LAQHHHLG 384
+ L+ + N ++C LC+ ET +HLF C E+W+ L H
Sbjct: 387 IKNRLTTGDRMLSWNAGADSSCVLCHHLVETRDHLFFTCPYSAEVWSTLTRKLLSQHFTN 446
Query: 385 TWEESPEQLIRNLILRNKSNPKKTKYYFYL-ISLFWKARN 423
W E+ +L+ N L ++ P T+Y F L + WK RN
Sbjct: 447 RW-EAILKLLTNKSLGHEV-PFLTRYTFQLTLHSLWKERN 484