BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0810.1
(786 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 89 5e-18
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 86 3e-17
AT4G20520.1 | RNA binding / RNA-directed DNA polymerase | Chr4:1... 84 5e-17
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 83 2e-16
AT1G10000.1 | Ribonuclease H-like superfamily protein | Chr1:326... 69 4e-12
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 28 ALHLESLWKEKSRNENIQLGDRNTKFFHAKAIHRNRKNRISTIKDNHGSWLQEASDIANL 87
A LES +++KSR + +Q GD NT+FFH + KN I ++ + ++ + + +
Sbjct: 428 AAALESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEM 487
Query: 88 FTLNLQTISTSNGSGIS----EELLEVFVSQVTNDQNTILTNKPSELEIHNSVKSFKADS 143
+ S+ ++ + + ++ + + + L+ PS+ EI +V + +
Sbjct: 488 IVAYYTHLLGSDSDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNK 547
Query: 144 APGPDGFPPHFYKTNWDTVKEDLIVLVSDFFLHATLPEQVNHTHICLIPKTKSPQTSSDY 203
APGPD F F+ +W VK+ I V +FF L ++ N T I LIPK S +
Sbjct: 548 APGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMF 607
Query: 204 RPISIMKTTYKIIT 217
RP+S YKIIT
Sbjct: 608 RPVSCCTVVYKIIT 621
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 157/378 (41%), Gaps = 56/378 (14%)
Query: 451 NQAFLCKLVWRLTKNPKSPWASILKAKYFNK-DHKPKSAKNHHSWLWKFISNYVDKVSNL 509
N A L K +WR+ P+S A + K++YF+K D + S++WK I + +
Sbjct: 65 NLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQG 124
Query: 510 TFWDINKGTNINIWQDYWVPNHP----------PPLTNRTNSDLTKVHQLI--RNNQWDT 557
+ G +I IW+ W+ + P PP + S + KV LI +W
Sbjct: 125 ARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRK 184
Query: 558 NILYQCFNRDICNAILSINIQAQQD-DIPRWSLMKSGKFTIKSMYYYL-RTENYNYDMKE 615
+++ F I + ++ D W SG +T+KS Y+ L + N +E
Sbjct: 185 DVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQE 244
Query: 616 ---------WAFIWYLPILPRIKLFLWKCCTNSLPVRDKIG-NYIGHIYHCELCQN-QET 664
+ IW P+I+ FLWKC +NSLPV + ++ C C + +ET
Sbjct: 245 VSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKET 304
Query: 665 MIHVLLHCDLAKVIWMHFNIITSNINNIVD-------WIISWKDID---DHISSRFAIIM 714
+ H+L C A++ W +I D W+ + + + + S ++
Sbjct: 305 VNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLL 364
Query: 715 WHIWKARCDKCFESKD----PVPMKIIDDIKS----------STNLQYTQNTYQRIEKEN 760
W +WK R + F ++ V + DD++ T Q +++ R
Sbjct: 365 WRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR----- 419
Query: 761 DWSPPVYPFVKINVDASF 778
W PP + +VK N DA++
Sbjct: 420 -WRPPPHQWVKCNTDATW 436
>AT4G20520.1 | RNA binding / RNA-directed DNA polymerase |
Chr4:11045912-11047716 FORWARD LENGTH=376 | 201606
Length = 376
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 12/162 (7%)
Query: 220 LANRLKIILPDIISPFQAAYVPGRQITDNVIISQEITHSFKRTKGSRSFFALKLDMSKAF 279
+ RLK ++ ++I P QA+++PGR TDN++ QE HS +R KG + + LKLD+ KA+
Sbjct: 1 MVERLKPLMTNLIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAY 60
Query: 280 DRIEWQFLEAIMSRLGFSPHWINLIHTCISTSTMAVLINGRPG----PTFNVSR-GIRQG 334
DRI W +LE + GF W+ I + GR P + R G R
Sbjct: 61 DRIRWDYLEDTLISAGFPEVWLPEIARSTFGARRVAPEVGRADASKRPRVSDHRWGFRYD 120
Query: 335 DPLSPFLFTLVMEGLSRLLETKDLSVPFRGFPIPRTNINLKH 376
D +PF V + LL +++ RG IP ++LK
Sbjct: 121 DMAAPFTSNSV--ACAELL--REIG---RGSGIPSMPLDLKE 155
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 154/351 (43%), Gaps = 55/351 (15%)
Query: 474 LKAKYFNKDHKPKSAK--NHHSWLWKFISNYVDKVSNLTFWDINKGTNINIWQDYWVPNH 531
+KA+YF KD AK S+ W + + + + T I G NI I D V +H
Sbjct: 1 MKARYF-KDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH 59
Query: 532 PP-PL-TNRTNSDLTKVHQLIRNNQ---WDTNILYQCFNRDICNAILSINI-QAQQDDIP 585
PP PL T T ++T + R WD + + Q ++ I I + ++++ D
Sbjct: 60 PPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKI 119
Query: 586 RWSLMKSGKFTIKSMYYYLRTE-----------NYNYDMKEWAFIWYLPILPRIKLFLWK 634
W+ +G++T++S Y+ L + + + D+K IW LPI+P++K FLW+
Sbjct: 120 IWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK--TRIWNLPIMPKLKHFLWR 177
Query: 635 CCTNSLPVRDKIGNYIGHI-YHCELCQNQ-ETMIHVLLHCDLAKVIW-----------MH 681
+ +L +++ I C C + E++ H L C A + W +
Sbjct: 178 ALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLM 237
Query: 682 FNIITSNINNIVDWIISWKDIDDHISSRF-----AIIMWHIWKARCDKCFESKDPVPMKI 736
N NI+NI+++ + D S F ++W IWKAR + F P K
Sbjct: 238 SNDFEENISNILNF------VQDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKT 291
Query: 737 IDDIKSSTN--LQYTQN-------TYQRIEKENDWSPPVYPFVKINVDASF 778
+ K+ T+ L TQ+ T Q E + +W P +VK N DA F
Sbjct: 292 VLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 342
>AT1G10000.1 | Ribonuclease H-like superfamily protein |
Chr1:3263877-3264788 REVERSE LENGTH=303 | 201606
Length = 303
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 625 LPRIKLFLWKCCTNSLPVRDK-IGNYIGHIYHCELCQNQETMIHVLLHCDLAKVIW---- 679
+P+IKLFLWK +LPV + + +I + C C ET H+L HCD A +W
Sbjct: 1 MPKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCGAPETSTHMLFHCDFAAQVWNLAP 60
Query: 680 ---MHFNIITSNIN--NIVDWIISWKDIDDHISSRFAIIMWHIWKARCDKCFE 727
H I T + N++ I + H ++ F I WHIWKAR F+
Sbjct: 61 LQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQ 113