BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0850.1
(323 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 156 2e-42
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 156 2e-42
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 117 3e-31
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 60 4e-11
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 156 bits (395), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 99/147 (67%)
Query: 2 HSPTSTHLILVKKILRYLKGSVGSGVRLSPSDLTTVTAFSDSDWAGCPDSRKSTAGYCVF 61
+P H V KIL Y+KG+VG G+ S + FSD+ + C D+R+ST GYC+F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 62 LGSNIISWSSKKQATVAKSSTEAEYKALSTMATEVVWISYLMAELRFPLQKPFKLYCDNI 121
LG+++ISW SKKQ V+KSS EAEY+ALS E++W++ EL+ PL KP L+CDN
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526
Query: 122 SAKYLASNPVFHARTKHIEVDFHYVRD 148
+A ++A+N VFH RTKHIE D H VR+
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 156 bits (395), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 73/147 (49%), Positives = 99/147 (67%)
Query: 2 HSPTSTHLILVKKILRYLKGSVGSGVRLSPSDLTTVTAFSDSDWAGCPDSRKSTAGYCVF 61
+P H V KIL Y+KG+VG G+ S + FSD+ + C D+R+ST GYC+F
Sbjct: 407 EAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMF 466
Query: 62 LGSNIISWSSKKQATVAKSSTEAEYKALSTMATEVVWISYLMAELRFPLQKPFKLYCDNI 121
LG+++ISW SKKQ V+KSS EAEY+ALS E++W++ EL+ PL KP L+CDN
Sbjct: 467 LGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNT 526
Query: 122 SAKYLASNPVFHARTKHIEVDFHYVRD 148
+A ++A+N VFH RTKHIE D H VR+
Sbjct: 527 AAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 117 bits (294), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 71/100 (71%)
Query: 1 MHSPTSTHLILVKKILRYLKGSVGSGVRLSPSDLTTVTAFSDSDWAGCPDSRKSTAGYCV 60
MH PT L+K++LRY+KG++ G+ + + V AF DSDWAGC +R+ST G+C
Sbjct: 128 MHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCT 187
Query: 61 FLGSNIISWSSKKQATVAKSSTEAEYKALSTMATEVVWIS 100
FLG NIISWS+K+Q TV++SSTE EY+AL+ A E+ W S
Sbjct: 188 FLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTWSS 227
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 59.7 bits (143), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 12 VKKILRYLKGSVGSGVRLSPSDLTTVTAFSDSDWAGCPDSRKSTAGYC 59
V K+L Y+KG+VG G+ S + + AF+DSDWA CPD+R+S G+C
Sbjct: 32 VYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79