BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0880.1
(1198 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 372 e-111
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 372 e-111
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 133 2e-34
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 100 8e-24
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 58 9e-10
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 372 bits (956), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/502 (38%), Positives = 315/502 (62%), Gaps = 13/502 (2%)
Query: 684 EPQTFTEAMTTPEAPFWKEAVNSEIESIMQNHTWELVDLPPGCKPLGCKWIFKRKLKTDG 743
EP T+ EA E W A++ EI ++ HTWE+ LPP KP+GCKW++K K +DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 744 SIDKYKARLVAQGFRQKEGLDYFDTYSPVSRITSIRVLVAITSLYNLEIHQMDVKTAFLN 803
+I++YKARLVA+G+ Q+EG+D+ +T+SPV ++TS+++++AI+++YN +HQ+D+ AFLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 804 GQLEEEIYMNQPEGFIAPGQEK----KVCRLVKSLYGLKQAPKQWHLKFDDTLLSNGFKI 859
G L+EEIYM P G+ A + VC L KS+YGLKQA +QW LKF TL+ GF
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 860 NECDKCVYTKITAKGCVILCLYVDDMLIMGNNLDVINTTKKMLSKTFDMKDLGKAEVILG 919
+ D + KITA + + +YVDD++I NN ++ K L F ++DLG + LG
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLG 321
Query: 920 IKVSKTAEGISLSQTHYVEKILEKFSKDDLKMANTPIDPSIHLMKNT-GNAVKQLEYSRI 978
++++++A GI++ Q Y +L++ K ++ P+DPS+ ++ G+ V Y R+
Sbjct: 322 LEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRL 381
Query: 979 IGSLMYLMNCTRPDIAYSVSKLSRFTSNPNNTHWNAITRVLRYLRKTKEYGLHYTTYPAV 1038
IG LMYL TR DI+++V+KLS+F+ P H A+ ++L Y++ T GL Y++ +
Sbjct: 382 IGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEM 440
Query: 1039 -LEGYADANWISDTDDTKSTSGYVFTLGGAAISWKSSKQTCIARSTMDSEFIALDKAGEE 1097
L+ ++DA++ S D +ST+GY LG + ISWKS KQ +++S+ ++E+ AL A +E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 1098 AEWLRQFLEDIPIWPKPVPAINIHCDNQAAIALAQSKMYNGKSRHIRRRHNTVKQLLSEG 1157
WL QF ++ + P P + + CDN AAI +A + +++ +++HI ++V++ S
Sbjct: 501 MMWLAQFFRELQL-PLSKPTL-LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE-RSVY 557
Query: 1158 IITINYIRSKDNLADPFTKGLS 1179
T++Y + D FT+ LS
Sbjct: 558 QATLSYSFQAYDEQDGFTEYLS 579
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 372 bits (956), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/502 (38%), Positives = 315/502 (62%), Gaps = 13/502 (2%)
Query: 684 EPQTFTEAMTTPEAPFWKEAVNSEIESIMQNHTWELVDLPPGCKPLGCKWIFKRKLKTDG 743
EP T+ EA E W A++ EI ++ HTWE+ LPP KP+GCKW++K K +DG
Sbjct: 85 EPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141
Query: 744 SIDKYKARLVAQGFRQKEGLDYFDTYSPVSRITSIRVLVAITSLYNLEIHQMDVKTAFLN 803
+I++YKARLVA+G+ Q+EG+D+ +T+SPV ++TS+++++AI+++YN +HQ+D+ AFLN
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201
Query: 804 GQLEEEIYMNQPEGFIAPGQEK----KVCRLVKSLYGLKQAPKQWHLKFDDTLLSNGFKI 859
G L+EEIYM P G+ A + VC L KS+YGLKQA +QW LKF TL+ GF
Sbjct: 202 GDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQ 261
Query: 860 NECDKCVYTKITAKGCVILCLYVDDMLIMGNNLDVINTTKKMLSKTFDMKDLGKAEVILG 919
+ D + KITA + + +YVDD++I NN ++ K L F ++DLG + LG
Sbjct: 262 SHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLG 321
Query: 920 IKVSKTAEGISLSQTHYVEKILEKFSKDDLKMANTPIDPSIHLMKNT-GNAVKQLEYSRI 978
++++++A GI++ Q Y +L++ K ++ P+DPS+ ++ G+ V Y R+
Sbjct: 322 LEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRL 381
Query: 979 IGSLMYLMNCTRPDIAYSVSKLSRFTSNPNNTHWNAITRVLRYLRKTKEYGLHYTTYPAV 1038
IG LMYL TR DI+++V+KLS+F+ P H A+ ++L Y++ T GL Y++ +
Sbjct: 382 IGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEM 440
Query: 1039 -LEGYADANWISDTDDTKSTSGYVFTLGGAAISWKSSKQTCIARSTMDSEFIALDKAGEE 1097
L+ ++DA++ S D +ST+GY LG + ISWKS KQ +++S+ ++E+ AL A +E
Sbjct: 441 QLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500
Query: 1098 AEWLRQFLEDIPIWPKPVPAINIHCDNQAAIALAQSKMYNGKSRHIRRRHNTVKQLLSEG 1157
WL QF ++ + P P + + CDN AAI +A + +++ +++HI ++V++ S
Sbjct: 501 MMWLAQFFRELQL-PLSKPTL-LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE-RSVY 557
Query: 1158 IITINYIRSKDNLADPFTKGLS 1179
T++Y + D FT+ LS
Sbjct: 558 QATLSYSFQAYDEQDGFTEYLS 579
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 133 bits (334), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%)
Query: 878 LCLYVDDMLIMGNNLDVINTTKKMLSKTFDMKDLGKAEVILGIKVSKTAEGISLSQTHYV 937
L LYVDD+L+ G++ ++N LS TF MKDLG LGI++ G+ LSQT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 938 EKILEKFSKDDLKMANTPIDPSIHLMKNTGNAVKQLEYSRIIGSLMYLMNCTRPDIAYSV 997
E+IL D K +TP+ ++ +T ++ I+G+L YL TRPDI+Y+V
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDISYAV 121
Query: 998 SKLSRFTSNPNNTHWNAITRVLRYLRKTKEYGLHYTTYPAV-LEGYADANWISDTDDTKS 1056
+ + + P ++ + RVLRY++ T +GL+ + ++ + D++W T +S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 1057 TSGYVFTLGGAAISWKSSKQTCIARSTMDSEFIALDKAGEEAEW 1100
T+G+ LG ISW + +Q ++RS+ ++E+ AL E W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 100 bits (248), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 76/118 (64%), Gaps = 5/118 (4%)
Query: 677 LTYMIENEPQTFTEAMTTPEAPFWKEAVNSEIESIMQNHTWELVDLPPGCKPLGCKWIFK 736
+T I+ EP++ A+ P W +A+ E++++ +N TW LV P LGCKW+FK
Sbjct: 20 ITTTIKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFK 76
Query: 737 RKLKTDGSIDKYKARLVAQGFRQKEGLDYFDTYSPVSRITSIRVLVAITSLYNLEIHQ 794
KL +DG++D+ KARLVA+GF Q+EG+ + +TYSPV R +IR ++ + LE+ Q
Sbjct: 77 TKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQ--QLEVGQ 132
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 57.8 bits (138), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 983 MYLMNCTRPDIAYSVSKLSRFTSNPNNTHWNAITRVLRYLRKTKEYGLHYT-TYPAVLEG 1041
MYL TRPD+ ++V++LS+F+S A+ +VL Y++ T GL Y+ T L+
Sbjct: 1 MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 1042 YADANWISDTDDTKSTSGY 1060
+AD++W S D +S +G+
Sbjct: 60 FADSDWASCPDTRRSVTGF 78