BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0890.1
(148 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00980.1 | zinc knuckle (CCHC-type) family protein | Chr4:422... 51 5e-08
>AT4G00980.1 | zinc knuckle (CCHC-type) family protein |
Chr4:422732-424580 REVERSE LENGTH=488 | 201606
Length = 488
Score = 51.2 bits (121), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 2 ARTRTTLRVIPPNTTNG---EKPEKFKGTNFNRWKLKMMFYLTTLGLVKYLTEEKPTHAE 58
AR T + ++++G K +F G ++ W +M +L L L L+E P+
Sbjct: 173 ARNGDTSEAVDKDSSHGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGS 232
Query: 59 IEDEAQRTAEI-------EAWKQEDFLCKNYILNSLDDGLYNLYSV-IETSKQLWDTL 108
+ EI + W ++D+LC +++NSL D LY YS + +K+LWD L
Sbjct: 233 SQGPETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDEL 290