BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000113.1_g0950.1
(893 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00860.1 | DNA/RNA polymerases superfamily protein | ChrM:235... 79 1e-16
>ATMG00860.1 | DNA/RNA polymerases superfamily protein |
ChrM:235916-236392 FORWARD LENGTH=158 | 201606
Length = 158
Score = 78.6 bits (192), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 770 LHHLTLVLVRCKEKNLVLNWEKCHFMVRSGIVLGH--VISAKGIEVDKSKVELIKSLPVP 827
++HL +VL ++ N +KC F LGH +IS +G+ D +K+E + P P
Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60
Query: 828 KTVKDIRSFLGHAGFYRRFIKDFSKISRPLCNLLAKENKFVFDNACLEAFDKLK 881
K ++R FLG G+YRRF+K++ KI RPL LL K+N + AF LK
Sbjct: 61 KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELL-KKNSLKWTEMAALAFKALK 113