BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0050.1
(636 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78160.1 | pumilio 7 | Chr1:29407900-29410184 FORWARD LENGTH=... 242 5e-71
AT1G78160.2 | pumilio 7 | Chr1:29407894-29410184 FORWARD LENGTH=... 242 6e-71
AT1G22240.1 | pumilio 8 | Chr1:7853084-7854963 FORWARD LENGTH=51... 234 2e-69
AT1G35730.1 | pumilio 9 | Chr1:13227324-13229796 REVERSE LENGTH=... 217 2e-62
AT5G56510.6 | pumilio 12 | Chr5:22881721-22883842 FORWARD LENGTH... 218 2e-62
>AT1G78160.1 | pumilio 7 | Chr1:29407900-29410184 FORWARD LENGTH=650
| 201606
Length = 650
Score = 242 bits (618), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 210/385 (54%), Gaps = 84/385 (21%)
Query: 309 EAFSGEGSWIIEGNSLNTLNNKKSYHRTEQQKLPYNENILELNSNNSGSPSRFLFLTQPT 368
E FS + S+ + G S++ + R+ N L SNN G+P+ + P+
Sbjct: 288 EPFSSDESFFMNGKSID-------HQRS---------NTRALMSNN-GNPTE---ICHPS 327
Query: 369 YGSLWAFEGKFYSMAKDQNGCRFLQKKFNEATLQETQMIFYEIIDHVVELTMNPFGNYFV 428
++ +G Y MAKDQ+GCRFLQ+ F+E T + +IF E+I HVVEL M+PFGNY +
Sbjct: 328 LPNMCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLM 387
Query: 429 QKLLDVCT------------EEQRMQIVIMVTSYTNQ----------------LVRISLN 460
QKLLDVCT EE I I + +Y + LV+++L
Sbjct: 388 QKLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALR 447
Query: 461 ----------------------------------THGFCFDIATHKHGCCVLQKCIDHST 486
FC +IATH+HGCCVLQKCI +S
Sbjct: 448 PGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSM 507
Query: 487 GGRREKLLAEISVRGLYLAQDAFGNYVIQHIVKQQSPSANAVLHSQFMGRYITLSLQKFS 546
+REKL+AEIS L LAQD FGNY +Q +++ + PSA A++ +Q G Y+ LS+QKFS
Sbjct: 508 RQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFS 567
Query: 547 SHVVETCLRYFKGEEQSQIVHELLSFYPFEQLVQDEYANYVILSGLRYCKGSSVNALIGA 606
SH+VE CL + E + QIV EL+S F+QL+QD YAN+VI + L KG +L+
Sbjct: 568 SHMVERCLMHCP-ESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEV 626
Query: 607 IQPHIAALKTSPYCKQIYSKVVSRK 631
I+PH + L+ +PYCK+I+S+ + +K
Sbjct: 627 IRPH-SILRNNPYCKRIFSRNLLKK 650
>AT1G78160.2 | pumilio 7 | Chr1:29407894-29410184 FORWARD LENGTH=652
| 201606
Length = 652
Score = 242 bits (618), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 210/385 (54%), Gaps = 84/385 (21%)
Query: 309 EAFSGEGSWIIEGNSLNTLNNKKSYHRTEQQKLPYNENILELNSNNSGSPSRFLFLTQPT 368
E FS + S+ + G S++ + R+ N L SNN G+P+ + P+
Sbjct: 290 EPFSSDESFFMNGKSID-------HQRS---------NTRALMSNN-GNPTE---ICHPS 329
Query: 369 YGSLWAFEGKFYSMAKDQNGCRFLQKKFNEATLQETQMIFYEIIDHVVELTMNPFGNYFV 428
++ +G Y MAKDQ+GCRFLQ+ F+E T + +IF E+I HVVEL M+PFGNY +
Sbjct: 330 LPNMCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLM 389
Query: 429 QKLLDVCT------------EEQRMQIVIMVTSYTNQ----------------LVRISLN 460
QKLLDVCT EE I I + +Y + LV+++L
Sbjct: 390 QKLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALR 449
Query: 461 ----------------------------------THGFCFDIATHKHGCCVLQKCIDHST 486
FC +IATH+HGCCVLQKCI +S
Sbjct: 450 PGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSM 509
Query: 487 GGRREKLLAEISVRGLYLAQDAFGNYVIQHIVKQQSPSANAVLHSQFMGRYITLSLQKFS 546
+REKL+AEIS L LAQD FGNY +Q +++ + PSA A++ +Q G Y+ LS+QKFS
Sbjct: 510 RQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFS 569
Query: 547 SHVVETCLRYFKGEEQSQIVHELLSFYPFEQLVQDEYANYVILSGLRYCKGSSVNALIGA 606
SH+VE CL + E + QIV EL+S F+QL+QD YAN+VI + L KG +L+
Sbjct: 570 SHMVERCLMHCP-ESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEV 628
Query: 607 IQPHIAALKTSPYCKQIYSKVVSRK 631
I+PH + L+ +PYCK+I+S+ + +K
Sbjct: 629 IRPH-SILRNNPYCKRIFSRNLLKK 652
>AT1G22240.1 | pumilio 8 | Chr1:7853084-7854963 FORWARD LENGTH=515 |
201606
Length = 515
Score = 234 bits (598), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 180/314 (57%), Gaps = 64/314 (20%)
Query: 375 FEGKFYSMAKDQNGCRFLQKKFNEATLQETQMIFYEIIDHVVELTMNPFGNYFVQKLLDV 434
F+G Y MAKDQ+GCRFLQ F + + + +IF E+I HVVEL M+PFGNY +QKLLDV
Sbjct: 199 FQGYVYFMAKDQHGCRFLQWIFEDGSALDALVIFSEVIPHVVELMMDPFGNYLMQKLLDV 258
Query: 435 CTEEQRMQ------------IVIMVTSYTNQLVR-----------ISL------------ 459
C EEQR Q I I + +Y ++V+ ISL
Sbjct: 259 CNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLVKSALRPGFLNL 318
Query: 460 ---------------------------NTHGFCFDIATHKHGCCVLQKCIDHSTGGRREK 492
+ FC DIATH+HGCCVLQKCI +S+G +REK
Sbjct: 319 IRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKCIAYSSGLQREK 378
Query: 493 LLAEISVRGLYLAQDAFGNYVIQHIVKQQSPSANAVLHSQFMGRYITLSLQKFSSHVVET 552
L+ EIS L+LAQD +GNY +Q +++ + SA A + +Q G Y+ LS+QKFSSH+VE
Sbjct: 379 LVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVER 438
Query: 553 CLRYFKGEEQSQIVHELLSFYPFEQLVQDEYANYVILSGLRYCKGSSVNALIGAIQPHIA 612
CL + E + QIV EL+S F+ L+QD YAN+VI + L KGS L+ I+PH +
Sbjct: 439 CLTHCP-ESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKGSLHATLVEVIRPH-S 496
Query: 613 ALKTSPYCKQIYSK 626
L+ +PYCK+I+S+
Sbjct: 497 ILRNNPYCKRIFSR 510
>AT1G35730.1 | pumilio 9 | Chr1:13227324-13229796 REVERSE LENGTH=564
| 201606
Length = 564
Score = 217 bits (553), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/398 (35%), Positives = 199/398 (50%), Gaps = 90/398 (22%)
Query: 316 SWIIEGN-----SLNTLNNKKSYHRTEQQKL--PYNENILELNSNNSGSP--SRFLFLTQ 366
S + EGN +L + + ++ E L P++E + S G+ + + Q
Sbjct: 175 SLMFEGNNRVSQTLAAMEASRGFYPEEDSSLLSPFHEKV----SGKLGASYLEDTVLIGQ 230
Query: 367 PTYG-----------SLWAFEGKFYSMAKDQNGCRFLQKKFNEATLQETQMIFYEIIDHV 415
+YG S+ G MAKDQ GCR LQK E T E ++I IIDHV
Sbjct: 231 GSYGKMSPKSNNDLVSMVEIYGSVNLMAKDQIGCRVLQKLVEEGTFHEAKVILLAIIDHV 290
Query: 416 VELTMNPFGNYFVQKLLDVCTEEQRMQIV------------IMVTSYTNQLVR------- 456
VEL+M+PFGNY VQKL DV EEQR IV I + +Y ++V+
Sbjct: 291 VELSMDPFGNYIVQKLFDVSDEEQRTLIVSVLTSNPRELIRICLNTYGTRVVQKMIETVK 350
Query: 457 ----ISLNTHG---------------------------------------FCFDIATHKH 473
I+L G +C +IA H+H
Sbjct: 351 TKQQIALVKSGLKPGFLALVKDLNGNHVIQSCLQTLGPNDNEFVLEAATKYCAEIAIHRH 410
Query: 474 GCCVLQKCIDHSTGGRREKLLAEISVRGLYLAQDAFGNYVIQHIVKQQSPSANAVLHSQF 533
GCCVLQ CI +S G +RE+L+AEIS L+L+QD FGNYV+Q+++ QQ + ++ QF
Sbjct: 411 GCCVLQCCISNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLIDQQVSAVKLLV--QF 468
Query: 534 MGRYITLSLQKFSSHVVETCLRYFKGEEQSQIVHELLSFYPFEQLVQDEYANYVILSGLR 593
Y L+ QKFSSHV+E CLR + E +++IV ELL FE L+QD YANYVI + L
Sbjct: 469 RMHYAELATQKFSSHVIEKCLRKYP-ESRAEIVRELLCVPNFEYLLQDPYANYVIQTALS 527
Query: 594 YCKGSSVNALIGAIQPHIAALKTSPYCKQIYSKVVSRK 631
KG L+ + + L +SPYCK+I+SK + +K
Sbjct: 528 VTKGPVRAKLVAKVYRY-GKLHSSPYCKKIFSKTILKK 564
>AT5G56510.6 | pumilio 12 | Chr5:22881721-22883842 FORWARD
LENGTH=596 | 201606
Length = 596
Score = 218 bits (555), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/332 (36%), Positives = 185/332 (55%), Gaps = 62/332 (18%)
Query: 362 LFLTQPTYGSLWAFEGKFYSMAKDQNGCRFLQKKFNEATLQETQMIFYEIIDHVVELTMN 421
L L Y S+ GK Y +AKDQ+GCRFLQ+ F+E + +MIF EIID++ EL M+
Sbjct: 265 LSLQPQKYNSIAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMIFNEIIDYISELMMD 324
Query: 422 PFGNYFVQKLLDVCTEEQRMQIV------------------------------------- 444
PFGNY VQKLL+VC E+QRMQIV
Sbjct: 325 PFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEIS 384
Query: 445 IMVTSYTNQLVRISLNTHG-------------------------FCFDIATHKHGCCVLQ 479
I++++ + +V + N +G C ++AT +HGCCVLQ
Sbjct: 385 IIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQ 444
Query: 480 KCIDHSTGGRREKLLAEISVRGLYLAQDAFGNYVIQHIVKQQSPSANAVLHSQFMGRYIT 539
KC+ +S G +++ L++EI+ L L+QD FGNYV+Q++ + Q A + Q G Y
Sbjct: 445 KCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWATFEILEQLEGNYTE 504
Query: 540 LSLQKFSSHVVETCLRYFKGEEQSQIVHELLSFYPFEQLVQDEYANYVILSGLRYCKGSS 599
LS+QK SS+VVE CL+ + +++I+ EL+++ +Q++ D Y NYVI + L+ KG+
Sbjct: 505 LSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGNYVIQAALKQSKGNV 564
Query: 600 VNALIGAIQPHIAALKTSPYCKQIYSKVVSRK 631
L+ AI+ +I++L+T+PY K++ S + S+K
Sbjct: 565 HALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596