BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0060.1
(717 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 194 2e-53
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 136 1e-33
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 136 1e-33
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 133 7e-32
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 111 2e-25
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 194 bits (494), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 154/561 (27%), Positives = 260/561 (46%), Gaps = 63/561 (11%)
Query: 185 AVPRYQMQCFAIPKGICNSIESLQRTFWW---GKSKTFHTINWSAICKPKNQGGLGLRLP 241
A+P Y M CF +PK +C I S+ FWW ++K H W + K +GG+G +
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 242 HLDNLAFLHKIIWRIINNPKAIWVKVLKSKYFPNTHRPSLPKTTH-SWPWKSIGKYYDMT 300
NLA L K +WR+++ P+++ KV KS+YF + + P + S+ WKSI ++
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 301 NSLIFWNINTGTQINIWKDFWIPNHP----------PPIINHSGVNIQWVAQLI--TNNN 348
+ G I IW+ W+ + P PP S +I V+ LI +
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181
Query: 349 WNMQMIHQCFNDDICSAILSINLQNNQ-EDKPIWTLTKSGNFTIKSMYFHL------RSY 401
W +I F + I + + D W T SG++T+KS Y+ L RS
Sbjct: 182 WRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSS 241
Query: 402 NMNVMQDNLE--WKFIWNLNTIPRVKIFLWKCCTNSLPVKEKIG-KFIGDQFSCINCEDI 458
V + +L ++ IW T P+++ FLWKC +NSLPV + + + + +CI C
Sbjct: 242 PQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSC 301
Query: 459 -ETLDHVLLHCTVAKAIWFNYNVR-------TDQISSTTQWII-------QWKTLKEETI 503
ET++H+L CT A+ W ++ D I W+ QW E+
Sbjct: 302 KETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQW----EKAS 357
Query: 504 SLYAKILWHIWKARCDNCFNTNKKNPPQIIDQINNANITPLKFEKITNSKGRITKKKQ-- 561
L +LW +WK R + F + N +++ + + ++ + S G + +
Sbjct: 358 QLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTKPQVNRSS 416
Query: 562 --KWSPPSTPYLKLNVDASFTKVEEPAGIGCIIRDDESRFIIAAAHTV-RSQHAEESEGL 618
+W PP ++K N DA++ + E GIG ++R+++ A + + + E+E
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAE-- 474
Query: 619 AILTSMQWA----TQLNISHAHIESDNQAIINYLNGHITALHWQSMK-TIQQIQSMKNNF 673
L +M+WA ++ ++ ESD+Q +I LN W S+K TIQ +Q + + F
Sbjct: 475 --LEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEI---WPSLKPTIQDLQRLLSQF 529
Query: 674 AGIKFTHISRKSNAPADALAK 694
+KF I R+ N A+ +A+
Sbjct: 530 TEVKFVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 29/436 (6%)
Query: 60 LIINHLLFADDCIIFGRNSLDNIHNLKIILREFSDASGQMINYSKSTIFFSKNSHPKFKR 119
++I HL FADD ++F +I + I +F+D SG I+ KSTI+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 120 MIIRELKVHQSSTCDKYLGTNLFIGKNKKATFQPLLSQIKNKLAKWQSNLLSQAGRSVVI 179
I+ + +YLG L K + + PL+ +I+ ++ KW + LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 STIAAAVPRYQMQCFAIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPKNQGGL 236
S++ ++ + M F +P I+S+ +F W + + WS +C PK++GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GLRLPHLDNLAFLHKIIWRIINNPKAIWVKVLKSKYFPNTHRPSLPKTT--HSWPWKSIG 294
G+R N L K+IWR++++ ++WV+ L+ S+ T SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 295 KYYDMTNSLIFWNINTGTQINIWKDFW--------IPNHPPPIINHSGVNIQW-VAQLIT 345
K+ + + + +I+ G+ + W D W + H I G+ + VA+ +
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI--DMGITLHASVAEAVV 301
Query: 346 NNNWNMQMIHQCFN-DDICSAILSINLQNNQEDKPIWTLTKSGNFTIKSMYFHLRSYNMN 404
N+ +D+ + + L + ++ T+ GN I F+ +
Sbjct: 302 NHRPRRHRHDTLLRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKETWAA 356
Query: 405 VMQDNLE---WKFIWNLNTIPRVKIFLWKCCTNSLPVKEKIGKF-IGDQFSCINCED-IE 459
+ L+ +K +W + P+ + W N L +++ + G SC+ C +E
Sbjct: 357 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVE 416
Query: 460 TLDHVLLHCTVAKAIW 475
T DH+ C + +W
Sbjct: 417 TRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 136 bits (342), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 195/436 (44%), Gaps = 29/436 (6%)
Query: 60 LIINHLLFADDCIIFGRNSLDNIHNLKIILREFSDASGQMINYSKSTIFFSKNSHPKFKR 119
++I HL FADD ++F +I + I +F+D SG I+ KSTI+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 120 MIIRELKVHQSSTCDKYLGTNLFIGKNKKATFQPLLSQIKNKLAKWQSNLLSQAGRSVVI 179
I+ + +YLG L K + + PL+ +I+ ++ KW + LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 STIAAAVPRYQMQCFAIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPKNQGGL 236
S++ ++ + M F +P I+S+ +F W + + WS +C PK++GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GLRLPHLDNLAFLHKIIWRIINNPKAIWVKVLKSKYFPNTHRPSLPKTT--HSWPWKSIG 294
G+R N L K+IWR++++ ++WV+ L+ S+ T SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 295 KYYDMTNSLIFWNINTGTQINIWKDFW--------IPNHPPPIINHSGVNIQW-VAQLIT 345
K+ + + + +I+ G+ + W D W + H I G+ + VA+ +
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI--DMGITLHASVAEAVV 301
Query: 346 NNNWNMQMIHQCFN-DDICSAILSINLQNNQEDKPIWTLTKSGNFTIKSMYFHLRSYNMN 404
N+ +D+ + + L + ++ T+ GN I F+ +
Sbjct: 302 NHRPRRHRHDTLLRIEDVIAEVRHQGLTSGED-----TVRWKGNGDIFKPCFNTKETWAA 356
Query: 405 VMQDNLE---WKFIWNLNTIPRVKIFLWKCCTNSLPVKEKIGKF-IGDQFSCINCED-IE 459
+ L+ +K +W + P+ + W N L +++ + G SC+ C +E
Sbjct: 357 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVE 416
Query: 460 TLDHVLLHCTVAKAIW 475
T DH+ C + +W
Sbjct: 417 TRDHLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 133 bits (334), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 194/437 (44%), Gaps = 29/437 (6%)
Query: 60 LIINHLLFADDCIIFGRNSLDNIHNLKIILREFSDASGQMINYSKSTIFFSKNSHPKFKR 119
++I HL FADD ++F +I + I +F+D SG I+ KSTI+ + K
Sbjct: 6 MLITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKA 64
Query: 120 MIIRELKVHQSSTCDKYLGTNLFIGKNKKATFQPLLSQIKNKLAKWQSNLLSQAGRSVVI 179
I+ + +YLG L K + + PL+ +I+ ++ KW + LS AGR +I
Sbjct: 65 DILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLI 124
Query: 180 STIAAAVPRYQMQCFAIPKGICNSIESLQRTFWWGKSK---TFHTINWSAICKPKNQGGL 236
S++ ++ + M F +P I+S+ +F W + + WS +C PK++GGL
Sbjct: 125 SSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGL 184
Query: 237 GLRLPHLDNLAFLHKIIWRIINNPKAIWVKVLKSKYFPNTHRPSLP--KTTHSWPWKSIG 294
G+R N L K+IWR++++ ++WV+ L+ S+ T SW WK I
Sbjct: 185 GIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKIL 243
Query: 295 KYYDMTNSLIFWNINTGTQINIWKDFW--------IPNHPPPIINHSGVNIQW-VAQLIT 345
K+ + + + +I+ G+ + W D W + H I G+ + VA+ +
Sbjct: 244 KHRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI--DMGITLHASVAEAVV 301
Query: 346 NNNWNMQMIHQCFN-DDICSAILSINLQNNQEDKPIWTLTKSGNFTIKSMYFHLRSYNMN 404
N+ +D+ + + L + ED W GN I F+ +
Sbjct: 302 NHRPRRHRHDTLLRIEDVIAEVRHQGLTSG-EDTVRW----KGNGDIFKPCFNTKETWAA 356
Query: 405 VMQDNLE---WKFIWNLNTIPRVKIFLWKCCTNSLPVKEKIGKF-IGDQFSCINCED-IE 459
+ L+ +K +W + P+ + W N L +++ + G SC+ C +E
Sbjct: 357 TREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCHHLVE 416
Query: 460 TLDHVLLHCTVAKAIWF 476
T DH+ C + + F
Sbjct: 417 TRDHLFFTCPYSAEVPF 433
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 191/427 (44%), Gaps = 48/427 (11%)
Query: 308 INTGTQINIWKDFWIPNHPPPIINHSGVNIQWVAQLITNNN----------WNMQMIHQC 357
I G I I D + +HPP +N + + +T NN W+ I Q
Sbjct: 42 IGDGQNIRIGLDNIVDSHPP-----RPLNTEETYKEMTINNLFERKGSYYFWDDSKISQF 96
Query: 358 FNDDICSAILSINLQNNQE-DKPIWTLTKSGNFTIKSMYF---HLRSYNM---NVMQDNL 410
+ I I L +++ DK IW +G +T++S Y+ H S N+ N ++
Sbjct: 97 VDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSI 156
Query: 411 EWKF-IWNLNTIPRVKIFLWKCCTNSLPVKEKI-GKFIGDQFSCINC-EDIETLDHVLLH 467
+ K IWNL +P++K FLW+ + +L E++ + + SC C + E+++H L
Sbjct: 157 DLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFT 216
Query: 468 CTVAKAIWFNYN---VRTDQISSTTQWIIQ--WKTLKEETISLYAKIL-----WHIWKAR 517
C A W + +R +S+ + I +++ T+S + K+L W IWKAR
Sbjct: 217 CPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKAR 276
Query: 518 CDNCFNTNKKNPPQIIDQINNAN---ITPLKFEKITNSKGR-ITKKKQKWSPPSTPYLKL 573
+ FN +++P + + + + K T S R I + K +W P Y+K
Sbjct: 277 NNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKC 336
Query: 574 NVDASFTKVEEPAGIGCIIRDDESRFI----IAAAHTVRSQHAEESEGLAILTSMQWATQ 629
N DA F + A G IIR+ I + AHT + E+E A+L ++Q
Sbjct: 337 NFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHT---SNPLEAETKALLAALQQTWI 393
Query: 630 LNISHAHIESDNQAIINYLNGHITALHWQSMKTIQQIQSMKNNFAGIKFTHISRKSNAPA 689
+ +E D Q +IN +NG + H ++ I N FA I+F I RK N A
Sbjct: 394 RGYTQVFMEGDCQTLINLING--ISFHSSLANHLEDISFWANKFASIQFGFIRRKGNKLA 451
Query: 690 DALAKWG 696
LAK+G
Sbjct: 452 HVLAKYG 458