BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0190.1
(402 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 108 1e-25
AT3G25270.1 | Ribonuclease H-like superfamily protein | Chr3:920... 81 1e-16
AT3G09510.1 | Ribonuclease H-like superfamily protein | Chr3:292... 80 3e-16
AT2G02650.1 | Ribonuclease H-like superfamily protein | Chr2:735... 59 2e-09
AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 52 2e-07
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 108 bits (271), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/436 (26%), Positives = 184/436 (42%), Gaps = 68/436 (15%)
Query: 1 MLKAKYFPLTDKP-GPAKPHHSWNWKIITKHYSMIENLAVWEVQSGKDIKIWEDNWI--- 56
+ K++YF +D P S+ WK I ++ A V +G+DI IW W+
Sbjct: 87 VFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSK 146
Query: 57 PDTTG-------PINNHNHSGLNKVSQLI--TNNAWNEEVLNANF-DIETQNLIKAIPVN 106
P + P + S + KVS LI + W ++V+ F ++E + + + P
Sbjct: 147 PASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGG 206
Query: 107 SEGTDQIKWKLTKSGKFTVKSMYQHLSTNNINQYPTEQN---------WKFIWSIPTVPR 157
D W T SG +TVKS Y L T IN+ + Q ++ IW T P+
Sbjct: 207 RRILDSYTWDYTSSGDYTVKSGYWVL-TQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPK 265
Query: 158 IKNFIWKICTKSLPVRNKIG-KYIDNN---MNCPNCTNIETIEHALLHCAIAKNIWFHFN 213
I++F+WK + SLPV + +++ + CP+C ET+ H L C A+ W +
Sbjct: 266 IQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCK--ETVNHLLFKCTFARLTWAISS 323
Query: 214 II-------SENITSITDWIF-------SWEKNSDLCYTSEDIHFAIILWILWKVRCDHC 259
I +++I W+F WEK S L +LW LWK R +
Sbjct: 324 IPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKASQLV--------PWLLWRLWKNRNELV 375
Query: 260 FQHEVNDLNIIIKMIESFPRKIIISKEK---------NQKTTEKWQPPPAQSIKINVDAS 310
F+ + +++ E + I E N+ + +W+PPP Q +K N DA+
Sbjct: 376 FRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDAT 435
Query: 311 FINITSNVGISLIAHNSESKFIEAQVKTSRARNSEESEAMAILYGLEWA----KEQDLKT 366
+ GI + N + E + +RA +S A L + WA
Sbjct: 436 WNRDNERCGIGWVLRNEKG---EVKWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNY 492
Query: 367 IIIKSDNINIINHLNN 382
+I +SD+ +I LNN
Sbjct: 493 VIFESDSQVLIEILNN 508
>AT3G25270.1 | Ribonuclease H-like superfamily protein |
Chr3:9203934-9204965 REVERSE LENGTH=343 | 201606
Length = 343
Score = 80.9 bits (198), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 122/277 (44%), Gaps = 31/277 (11%)
Query: 149 IWSIPTVPRIKNFIWKICTKSLPVRNKIG-KYIDNNMNCPNCTN-IETIEHALLHCAIAK 206
IW + T P+IK+F+WK+ + +L + + ++I N+ C C ET +H C A+
Sbjct: 18 IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77
Query: 207 NIWFHFNIISENITSITDWIFSWEKNSDLCYTS-------EDIHFAI-ILWILWKVRCDH 258
+W I + + + + E +L +S + + AI ILW LWK R
Sbjct: 78 QVWRASGIPHQELRTTG---ITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQL 134
Query: 259 CFQH--------------EVNDLNIIIKMIESFPRKIIISKEKNQKTTE-KWQPPPAQSI 303
FQ +V + ++S +++ S+ + KWQ PP+ I
Sbjct: 135 VFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWI 194
Query: 304 KINVDASFINITSNVGISLIAHNSESKFI-EAQVKTSRARNSEESEAMAILYGLEWAKEQ 362
K N D +F + T N + + ++ Q S +S ESE A++ ++ A Q
Sbjct: 195 KYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQ 254
Query: 363 DLKTIIIKSDNINIINHLNNKKNSVNWQSLIHIKQAR 399
+ +I + D+ + +NN+K +N+ I++ R
Sbjct: 255 GYRKVIFEGDSKQVEELMNNEK--LNFGRFNWIREGR 289
>AT3G09510.1 | Ribonuclease H-like superfamily protein |
Chr3:2921804-2923258 FORWARD LENGTH=484 | 201606
Length = 484
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/432 (21%), Positives = 175/432 (40%), Gaps = 69/432 (15%)
Query: 2 LKAKYFP-LTDKPGPAKPHHSWNWKIITKHYSMIENLAVWEVQSGKDIKIWEDNWIPD-T 59
+KA+YF ++ + S+ W + ++++ + G++I+I DN +
Sbjct: 1 MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSHP 60
Query: 60 TGPINNHNHSGLNKVSQLITNNA----WNEEVLNANFDIETQNLIKAIPV-NSEGTDQIK 114
P+N ++ L W++ ++ D I I + S+ D+I
Sbjct: 61 PRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKII 120
Query: 115 WKLTKSGKFTVKSMYQHL----STNNINQYPTEQNWKF---IWSIPTVPRIKNFIWKICT 167
W +G++TV+S Y L STN P + IW++P +P++K+F+W+ +
Sbjct: 121 WNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALS 180
Query: 168 KSLPVRNKI---GKYIDNNMNCPNC-TNIETIEHALLHCAIAKNIW-----------FHF 212
++L ++ G ID +CP C E+I HAL C A W
Sbjct: 181 QALATTERLTTRGMRIDP--SCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS 238
Query: 213 NIISENITSITDWIFSWEKNSDLCYTSEDIHFAIILWILWKVRCDHCFQHEVNDLNIIIK 272
N ENI++I +++ T D H + +W++W++ N++
Sbjct: 239 NDFEENISNILNFVQD--------TTMSDFHKLLPVWLIWRIWKARN--------NVVFN 282
Query: 273 MIESFPRKIIISK-----------EKNQKTTE----------KWQPPPAQSIKINVDASF 311
P K ++S + ++KT +W+ PPA +K N DA F
Sbjct: 283 KFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGF 342
Query: 312 -INITSNVGISLIAHNSESKFIEAQVKTSRARNSEESEAMAILYGLEWAKEQDLKTIIIK 370
+ G +I ++ + +K + N E+E A+L L+ + + ++
Sbjct: 343 DVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQQTWIRGYTQVFME 402
Query: 371 SDNINIINHLNN 382
D +IN +N
Sbjct: 403 GDCQTLINLING 414
>AT2G02650.1 | Ribonuclease H-like superfamily protein |
Chr2:735411-736546 FORWARD LENGTH=365 | 201606
Length = 365
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 114/271 (42%), Gaps = 26/271 (9%)
Query: 149 IWSIPTVPRIKNFIWKICTKSLPVRNKI-GKYIDNNMNCPNCT-NIETIEHALLHCAIAK 206
IW + P+IK+F+W+ T +L ++ + ID + C C ETI H + +C +
Sbjct: 37 IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96
Query: 207 NIWFHFNIISEN----ITSITDWIFSWEKNSDLCYTSEDIHFAI--ILWILWKVRCDHCF 260
++W NII N +S D + + S T+ F I+W LWK R F
Sbjct: 97 SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLF 156
Query: 261 QHEVNDLNIIIKMIESFPRKIIISKEKNQKT---------------TEKWQPPPAQSIKI 305
Q + + + + + + E + T + +W PPP +K
Sbjct: 157 QQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQWNPPPEGWVKC 216
Query: 306 NVDASFINIT--SNVGISLIAHNSESKFIEAQVKTSRARNSEESEAMAILYGLEWAKEQD 363
N D+ + + + G ++ N + K + S +EA+ L+ L+
Sbjct: 217 NFDSGYTQGSPYTRSGWTIRECNGH-IVLCGNAKLQSSTCSLHAEALGFLHALQVIWAHG 275
Query: 364 LKTIIIKSDNINIINHLNNKKNSVNWQSLIH 394
L+ + +SD+ +++ +NN ++ +LI+
Sbjct: 276 LRYVWFESDSKSLVTLINNGEDHSLLGTLIY 306
>AT2G34320.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr2:14484959-14485837 FORWARD
LENGTH=292 | 201606
Length = 292
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 17/222 (7%)
Query: 178 KYIDNNMNCPNCTNI-ETIEHALLHCAIAKNIWFHFNIISENITSITDWIFS---WEKNS 233
+++ +C C + ET+ H L C A+ +W I + TD +++ W N
Sbjct: 4 RHLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLNL 63
Query: 234 DLCYTSEDIHFAII---LWILWKVRCDHCFQ-HEVNDLNIIIKMIESFP----RKIIISK 285
++ ++ LW LWK R + F+ E + ++ + +E F R+ + K
Sbjct: 64 EVEIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGK 123
Query: 286 EKNQKTTE----KWQPPPAQSIKINVDASFINITSNVGISLIAHNSESKFIEAQVKT-SR 340
+ +W+ PP Q +K N DA++ GI I N + + R
Sbjct: 124 ASGPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPR 183
Query: 341 ARNSEESEAMAILYGLEWAKEQDLKTIIIKSDNINIINHLNN 382
+N E+E A+ + + + K II +SD ++N LN+
Sbjct: 184 TKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNS 225