BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0220.1
(161 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like... 55 2e-09
AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 55 2e-09
AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORW... 46 5e-06
>AT3G01410.2 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 44 TSIGPEQVWTLFVDGAS--SEATKGAGVVLISPDEEKTSHTTTFKLAVTNNKAEYEALLE 101
T I T+ DGAS + GAG VL + D + TNN AEY ALL
Sbjct: 147 TPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLL 206
Query: 102 GLKLAMKARAVNIRVYSDSQLVVNHVNGDNEAKGTDMIKYLKKVKELIGHFEKFTLTRI 160
GL+ A+ N+ V DS LV V G + M + K+ KEL+ F+ F + I
Sbjct: 207 GLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHI 265
>AT3G01410.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | Chr3:153650-155439 REVERSE
LENGTH=294 | 201606
Length = 294
Score = 55.1 bits (131), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 44 TSIGPEQVWTLFVDGAS--SEATKGAGVVLISPDEEKTSHTTTFKLAVTNNKAEYEALLE 101
T I T+ DGAS + GAG VL + D + TNN AEY ALL
Sbjct: 147 TPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLL 206
Query: 102 GLKLAMKARAVNIRVYSDSQLVVNHVNGDNEAKGTDMIKYLKKVKELIGHFEKFTLTRI 160
GL+ A+ N+ V DS LV V G + M + K+ KEL+ F+ F + I
Sbjct: 207 GLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHI 265
>AT1G24090.1 | RNase H family protein | Chr1:8520834-8522737 FORWARD
LENGTH=353 | 201606
Length = 353
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 53 TLFV--DGAS--SEATKGAGVVLISPDEEKTSHTTTFKLAVTNNKAEYEALLEGLKLAMK 108
T F+ DGAS + GA VL + D TNN AEY AL+ GLK A++
Sbjct: 216 TCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIE 275
Query: 109 ARAVNIRVYSDSQLVVNHVNGDNEAKGTDMIKYLKKVKELIGHFEKFTLTRI 160
NI+V DS+LV + G + + K K+ K L F ++ +
Sbjct: 276 KGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHV 327