BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0250.1
(597 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 58 1e-09
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 362 VKDVQSQKLIGTGRRHEALYFVEELIVPDVAASTFDLSSFRLSPSSSSFYLWHSRLGHVS 421
+K ++ + I G RH++LY ++ V +L+ + LWHSRL H+S
Sbjct: 29 LKVLKGCRTILKGNRHDSLYILQ----GSVETGESNLAE----TAKDETRLWHSRLAHMS 80
Query: 422 ASRLKYLVSTGALGDLQVNNISDCSGCKLAIFSALPFAQSLSVSIKPFDLVHSDVWGHFP 481
++ LV G L +V+++ C C + F+ + P D VHSD+WG
Sbjct: 81 QRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPS 140
Query: 482 VP 483
VP
Sbjct: 141 VP 142