BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0340.1
(347 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD LEN... 48 6e-07
AT2G15180.1 | Zinc knuckle (CCHC-type) family protein | Chr2:658... 47 2e-05
>AT4G00155.1 | retrotransposon Gag | Chr4:62235-62567 FORWARD
LENGTH=110 | 201606
Length = 110
Score = 48.1 bits (113), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 135 AAVWWDQLQRQRVGQGRAPIQNWASMKENLGDRFLPPDYQQHLFMTYQNCRQ 186
AA WW Q Q+ R G+ PI++W +KE L FLPP Y + +N +Q
Sbjct: 2 AASWWQQKQKTRKRAGKNPIKSWDKLKEKLCKTFLPPHYTSSVSNRLKNVKQ 53
>AT2G15180.1 | Zinc knuckle (CCHC-type) family protein |
Chr2:6588743-6590167 REVERSE LENGTH=474 | 201606
Length = 474
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 20/114 (17%)
Query: 68 NYYPNQLYPRRDYDEYKI---------KEEIPLFNG--YLSIEEFLDWLHEVERKVNMLY 116
N+YP YP R YK+ E LF+G YL E +++ E +
Sbjct: 83 NFYPT-FYPTRKVI-YKLFVHNGSKTYGPEFFLFSGLGYLQWESNMNYYFE-------FH 133
Query: 117 TVPGEHMVNIIACRLKGSAAVWWDQLQRQRVGQGRAPIQNWASMKENLGDRFLP 170
+ E ++I +LKGSA WWDQ + R + RAPI+ W +K N+ ++ P
Sbjct: 134 STAQEDKLSIALGQLKGSALWWWDQDEYNRWYERRAPIRTWERLKWNMCAKYSP 187