BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000117.1_g0380.1
         (129 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947...    54   3e-09
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240...    49   1e-07

>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
           Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
          Length = 369

 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 8   SITHSIASDILGLK-TARVIWTYLGLVFLQEFEAKKSSLRNKLQNIKKGLASVSEYLSKI 66
           +IT S+   I+ +  TAR +W  L  +F    EA+     N+L+       SV EY  K+
Sbjct: 81  TITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKL 140

Query: 67  KHLADSLVAVNDQVSDSELSRIALQGLGKEYSQFVITIQNREGIFNFAELRSRLIHHE 124
           K L+D L  V+  +SD  L    L GL ++Y   +  I+++    +F E RS L+  E
Sbjct: 141 KSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEE 198


>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
           Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
          Length = 308

 Score = 49.3 bits (116), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 53/108 (49%)

Query: 22  TARVIWTYLGLVFLQEFEAKKSSLRNKLQNIKKGLASVSEYLSKIKHLADSLVAVNDQVS 81
           T+R IW  +   F    +A+   L ++L+    G   V++Y  K+K LADSL  V+  V+
Sbjct: 94  TSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVT 153

Query: 82  DSELSRIALQGLGKEYSQFVITIQNREGIFNFAELRSRLIHHEHWLKE 129
           D  L    L GL  ++   +  I++R+   +F +  + L   E  LK 
Sbjct: 154 DRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEEDRLKR 201

Top