BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0440.1
(746 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 52 9e-08
ATMG00300.1 | Gag-Pol-related retrotransposon family protein | C... 47 6e-06
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 538 NRQITSVGNTLLIKASMPKYFWFHAYDTTTYLINRTPTKVLSYLTPYEVLFGQTPDYSML 597
NR I ++L + +PK F A +T ++IN+ P+ +++ P EV F P YS L
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 598 KVFGSMCYPYLGDVKSDKLSPRS 620
+ FG + Y + + KL PR+
Sbjct: 62 RRFGCVAYIHCDE---GKLKPRA 81
>ATMG00300.1 | Gag-Pol-related retrotransposon family protein |
ChrM:89617-90054 REVERSE LENGTH=145 | 201606
Length = 145
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 372 KTWHERLGHPSKKIIMSLERDKRIKLSSRDFMTLCSSCQLSKSHKLPFASSESSTTGPHE 431
+ WH RL H S++ + L + + S + C C K+H++ F++ + +T P +
Sbjct: 70 RLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLD 129
Query: 432 LIHCDIWGPSPV 443
+H D+WG V
Sbjct: 130 YVHSDLWGAPSV 141