BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0450.1
(201 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 158 1e-44
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 158 1e-44
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 112 2e-31
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 158 bits (400), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 98/145 (67%)
Query: 28 LHTSYIAALHPIHEPKTYKIAAQNENWVQAMKAEYQALIQNHTWVLTPKLPTMNILGCKW 87
L+ S++ + EP TY A + W AM E A+ HTW + P +GCKW
Sbjct: 72 LYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKW 131
Query: 88 VFKVKYNSDGSLERYKARLVAQGYTPQEGVDYQETFSPVVKIQTVRVTLTLAVTNQWPIQ 147
V+K+KYNSDG++ERYKARLVA+GYT QEG+D+ ETFSPV K+ +V++ L ++ + +
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 148 QLDVSNAFLHGDLHEAVYMKQPPGF 172
QLD+SNAFL+GDL E +YMK PPG+
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGY 216
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 158 bits (400), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 71/145 (48%), Positives = 98/145 (67%)
Query: 28 LHTSYIAALHPIHEPKTYKIAAQNENWVQAMKAEYQALIQNHTWVLTPKLPTMNILGCKW 87
L+ S++ + EP TY A + W AM E A+ HTW + P +GCKW
Sbjct: 72 LYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKW 131
Query: 88 VFKVKYNSDGSLERYKARLVAQGYTPQEGVDYQETFSPVVKIQTVRVTLTLAVTNQWPIQ 147
V+K+KYNSDG++ERYKARLVA+GYT QEG+D+ ETFSPV K+ +V++ L ++ + +
Sbjct: 132 VYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLH 191
Query: 148 QLDVSNAFLHGDLHEAVYMKQPPGF 172
QLD+SNAFL+GDL E +YMK PPG+
Sbjct: 192 QLDISNAFLNGDLDEEIYMKLPPGY 216
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 112 bits (281), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 7/114 (6%)
Query: 41 EPKTYKIAAQNENWVQAMKAEYQALIQNHTWVLTPKLPTMNILGCKWVFKVKYNSDGSLE 100
EPK+ A ++ W QAM+ E AL +N TW+L P NILGCKWVFK K +SDG+L+
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 101 RYKARLVAQGYTPQEGVDYQETFSPVVKIQTVRVTLTLAVTNQWPIQQLDVSNA 154
R KARLVA+G+ +EG+ + ET+SPVV+ T+R L +A QQL+V +
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA-------QQLEVGQS 133