BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0610.1
(616 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35690.1 | zinc metalloproteinase-like protein | Chr5:1386502... 95 3e-20
AT3G09840.1 | cell division cycle 48 | Chr3:3019494-3022832 FORW... 89 3e-18
AT5G03340.1 | ATPase%2C AAA-type%2C CDC48 protein | Chr5:810091-... 87 2e-17
AT3G53230.1 | ATPase%2C AAA-type%2C CDC48 protein | Chr3:1972341... 86 4e-17
>AT5G35690.1 | zinc metalloproteinase-like protein |
Chr5:13865027-13868117 REVERSE LENGTH=603 | 201606
Length = 603
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 208 HTHDDDNNFNIVFVIWRGKKLSVIIYSRATLNDWD-KLHNLTNIKSDTMRLLVPKPSTDK 266
H +D V ++W+G K SV I S A+L D +L LT + S+T+RL+VP+ + +K
Sbjct: 4 HRMEDSGKKIRVSLLWKGNKYSVEIDSGASLKDLGYELRKLTGVTSETLRLIVPRLN-EK 62
Query: 267 SFNLLMPFSDNHSNLTLQETSILKAKYIRMLGVFQGEIEEVLQSRTKADSRVAGF--DDK 324
+L++PFSD HS+L+LQE++I++ K IRM+GV + E+E VL+ +D R+ GF +++
Sbjct: 63 GSSLMLPFSDEHSSLSLQESNIIEDKTIRMMGVSEEEVEGVLKEAV-SDMRILGFEEEER 121
Query: 325 MLRQRISDRSQTKLKLPHDPGIMIHF 350
L+Q+ S S +KLP I F
Sbjct: 122 RLKQKKSYVSSASIKLPQGTYIFGDF 147
>AT3G09840.1 | cell division cycle 48 | Chr3:3019494-3022832 FORWARD
LENGTH=809 | 201606
Length = 809
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 56/84 (66%), Gaps = 10/84 (11%)
Query: 347 MIHFEDETIFVEILNLMTVTDEHFKTSLRTSNPSTPHETIVEVSNVNWGDISGLENMKRE 406
+I ED++I EILN M VT+EHF T+L SNPS ET+VEV NV+W DI GLEN+KRE
Sbjct: 432 VIDLEDDSIDAEILNSMAVTNEHFHTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRE 491
Query: 407 LQEIVQ----------KIGCSPTR 420
LQE VQ K G SP++
Sbjct: 492 LQETVQYPVEHPEKFEKFGMSPSK 515
>AT5G03340.1 | ATPase%2C AAA-type%2C CDC48 protein |
Chr5:810091-813133 REVERSE LENGTH=810 | 201606
Length = 810
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 56/84 (66%), Gaps = 10/84 (11%)
Query: 347 MIHFEDETIFVEILNLMTVTDEHFKTSLRTSNPSTPHETIVEVSNVNWGDISGLENMKRE 406
+I ED++I EILN M V++EHF T+L SNPS ET+VEV NV+W DI GLEN+KRE
Sbjct: 432 VIDLEDDSIDAEILNSMAVSNEHFHTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRE 491
Query: 407 LQEIVQ----------KIGCSPTR 420
LQE VQ K G SP++
Sbjct: 492 LQETVQYPVEHPEKFEKFGMSPSK 515
>AT3G53230.1 | ATPase%2C AAA-type%2C CDC48 protein |
Chr3:19723416-19726489 FORWARD LENGTH=815 | 201606
Length = 815
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 10/84 (11%)
Query: 347 MIHFEDETIFVEILNLMTVTDEHFKTSLRTSNPSTPHETIVEVSNVNWGDISGLENMKRE 406
+I +DE I EILN M V+++HF+T+L SNPS ET+VEV NV+W DI GLEN+KRE
Sbjct: 433 VIDLDDEEIDAEILNSMAVSNDHFQTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRE 492
Query: 407 LQEIVQ----------KIGCSPTR 420
LQE VQ K G SP++
Sbjct: 493 LQETVQYPVEHPEKFEKFGMSPSK 516