BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0640.1
(506 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 321 6e-99
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 321 6e-99
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 124 2e-32
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 91 4e-21
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 53 2e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 321 bits (823), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 166/459 (36%), Positives = 277/459 (60%), Gaps = 9/459 (1%)
Query: 9 WKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKSRLVAKGFRQ 68
W A+ E+ ++ +TW++ LPP K IG KW++K K DGT+E+YK+RLVAKG+ Q
Sbjct: 98 WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157
Query: 69 KEGRDFFDTYSPVTRITSIRILIAIVAIYNLEIHQMDVKTAFLNGELEEEIYMDQPEGFV 128
+EG DF +T+SPV ++TS+++++AI AIYN +HQ+D+ AFLNG+L+EEIYM P G+
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217
Query: 129 VKGLE----NKVCKLIKSLYGLKQAPKQWHEKFDQIVLENGFKINESDKCVYTKCVNGCY 184
+ + N VC L KS+YGLKQA +QW KF ++ GF + SD + K +
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277
Query: 185 VIICLYVDDMLILGTSLEIINQTKKLLIKNFEMKDLGQADVILGIKVIRKPEGIILSQTH 244
+ + +YVDD++I + +++ K L F+++DLG LG+++ R GI + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337
Query: 245 YIESVLRKFNQFDSSPARVPFDHSLVLKKNK-GEAVSQLEYSRVIGSLMDIMNCTRPDIA 303
Y +L + P+ VP D S+ + G+ V Y R+IG LM + TR DI+
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLM-YLQITRLDIS 396
Query: 304 YAVSRLSRYTCNPGQTHWDALIKVLRYLKYTLSHSLHY-SRYHAVLEGYTDANWISDSKE 362
+AV++LS+++ P H A++K+L Y+K T+ L Y S+ L+ ++DA++ S
Sbjct: 397 FAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDT 456
Query: 363 SKSTSGFVFTLARVVVALKSSKQTCIARSTMESEFIALDKAVEEAEWIRSFLDDIPIWPK 422
+ST+G+ L +++ KS KQ +++S+ E+E+ AL A +E W+ F ++ + P
Sbjct: 457 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PL 515
Query: 423 PMPSIQIHCDSTAAIAKAKNNIYNGKSRHIRRRHNSIKQ 461
P++ + CD+TAAI A N +++ +++HI +S+++
Sbjct: 516 SKPTL-LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 321 bits (823), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 166/459 (36%), Positives = 277/459 (60%), Gaps = 9/459 (1%)
Query: 9 WKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKSRLVAKGFRQ 68
W A+ E+ ++ +TW++ LPP K IG KW++K K DGT+E+YK+RLVAKG+ Q
Sbjct: 98 WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157
Query: 69 KEGRDFFDTYSPVTRITSIRILIAIVAIYNLEIHQMDVKTAFLNGELEEEIYMDQPEGFV 128
+EG DF +T+SPV ++TS+++++AI AIYN +HQ+D+ AFLNG+L+EEIYM P G+
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217
Query: 129 VKGLE----NKVCKLIKSLYGLKQAPKQWHEKFDQIVLENGFKINESDKCVYTKCVNGCY 184
+ + N VC L KS+YGLKQA +QW KF ++ GF + SD + K +
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277
Query: 185 VIICLYVDDMLILGTSLEIINQTKKLLIKNFEMKDLGQADVILGIKVIRKPEGIILSQTH 244
+ + +YVDD++I + +++ K L F+++DLG LG+++ R GI + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRK 337
Query: 245 YIESVLRKFNQFDSSPARVPFDHSLVLKKNK-GEAVSQLEYSRVIGSLMDIMNCTRPDIA 303
Y +L + P+ VP D S+ + G+ V Y R+IG LM + TR DI+
Sbjct: 338 YALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLM-YLQITRLDIS 396
Query: 304 YAVSRLSRYTCNPGQTHWDALIKVLRYLKYTLSHSLHY-SRYHAVLEGYTDANWISDSKE 362
+AV++LS+++ P H A++K+L Y+K T+ L Y S+ L+ ++DA++ S
Sbjct: 397 FAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDT 456
Query: 363 SKSTSGFVFTLARVVVALKSSKQTCIARSTMESEFIALDKAVEEAEWIRSFLDDIPIWPK 422
+ST+G+ L +++ KS KQ +++S+ E+E+ AL A +E W+ F ++ + P
Sbjct: 457 RRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PL 515
Query: 423 PMPSIQIHCDSTAAIAKAKNNIYNGKSRHIRRRHNSIKQ 461
P++ + CD+TAAI A N +++ +++HI +S+++
Sbjct: 516 SKPTL-LFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 124 bits (311), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 10/228 (4%)
Query: 187 ICLYVDDMLILGTSLEIINQTKKLLIKNFEMKDLGQADVILGIKVIRKPEGIILSQTHYI 246
+ LYVDD+L+ G+S ++N L F MKDLG LGI++ P G+ LSQT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 247 ESVLRKFNQFDSSPARVPFDHSLVLKKNKGEAVSQL----EYSRVIGSLMDIMNCTRPDI 302
E +L D P P L LK N + ++ ++ ++G+L + TRPDI
Sbjct: 63 EQILNNAGMLDCKPMSTP----LPLKLNSSVSTAKYPDPSDFRSIVGAL-QYLTLTRPDI 117
Query: 303 AYAVSRLSRYTCNPGQTHWDALIKVLRYLKYTLSHSLHYSRYHAV-LEGYTDANWISDSK 361
+YAV+ + + P +D L +VLRY+K T+ H L+ + + ++ + D++W +
Sbjct: 118 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTS 177
Query: 362 ESKSTSGFVFTLARVVVALKSSKQTCIARSTMESEFIALDKAVEEAEW 409
+ST+GF L +++ + +Q ++RS+ E+E+ AL E W
Sbjct: 178 TRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 90.9 bits (224), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 7 PFWKEAVVSEMDSIIQNNTWKLVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKSRLVAKGF 66
P W +A+ E+D++ +N TW LV P +G KW+FK K DGT+++ K+RLVAKGF
Sbjct: 38 PGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGF 97
Query: 67 RQKEGRDFFDTYSPVTRITSIRILIAIVAIYNLEIHQ 103
Q+EG F +TYSPV R +IR ++ + LE+ Q
Sbjct: 98 HQEEGIYFVETYSPVVRTATIRTILNVAQ--QLEVGQ 132
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 53.1 bits (126), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 295 MNCTRPDIAYAVSRLSRYTCNPGQTHWDALIKVLRYLKYTLSHSLHYSRYHAV-LEGYTD 353
+ TRPD+ +AV+RLS+++ A+ KVL Y+K T+ L YS + L+ + D
Sbjct: 3 LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFAD 62
Query: 354 ANWISDSKESKSTSGF 369
++W S +S +GF
Sbjct: 63 SDWASCPDTRRSVTGF 78