BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0680.1
(487 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 112 3e-28
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 62 4e-10
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 57 2e-08
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 112 bits (281), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 107/212 (50%), Gaps = 12/212 (5%)
Query: 20 PFDVHHSDSPTTILITPLLTG-DNYSSWSRGMSKALRAKDKLGFVDGSIDKPTDPNELEQ 78
P D+HH P+ I L DNY +W LR K GF+DG++ KP + L Q
Sbjct: 21 PPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQ 77
Query: 79 -WGRCNDLVSSWLINSVDPPLRSSILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCL 137
W +CN +V WL+NS+ L S++Y ETA +W++L F KI+QL+R ++ L
Sbjct: 78 PWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATL 137
Query: 138 KQGNLDVSTYFTHLKALQDELNSLLITEPCICGH-----GRSLVERTNQDRAMEFLQG-- 190
+QG V YF L + EL+ C CG + E +++ EFL G
Sbjct: 138 RQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFLMGLK 197
Query: 191 LNDRFSSIRSQILLIEPFPSILRIHSLIKQEE 222
LN F ++ ++I+ +P PS+ +++K E
Sbjct: 198 LNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 42 NYSSWSRGMSKALRAKDKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLINSVDPP-LRS 100
NY +W + D +G +DG++ PT+ N++ W + + +V L ++ P +
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTL-LPTNANDVN-WQKRDGIVKLSLYGTLTPKQFQG 87
Query: 101 SILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCLKQGNLDVSTYFTHLKALQDELNS 160
S + T+ DIW + ++F + +L + G++ V+ Y+ +K L D L +
Sbjct: 88 SFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRN 147
Query: 161 LLITEPCICGHGRSLVERTNQDRAMEFLQGLNDRFSSIRSQILLIEPFPSILRIHSLIKQ 220
+ V T+++ M L GLN +F +I + I +PFPS +++++
Sbjct: 148 VD-------------VPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 221 EE 222
EE
Sbjct: 195 EE 196
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 20/194 (10%)
Query: 32 ILITPLLTGDNYSSWSRGMSKALRAKDKLGFVDGSIDKPTDPNELEQWGRCNDLVSSWLI 91
I +T L NY W + LG +DGS PT P ++W + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 92 NSV-DPPLRSSILYDETASDIWKNLFDRFHQTNAPKIFQLKRAISCLKQGNLDVSTYFTH 150
++ D L + I TA D+W +L + F + Q + + +L V Y
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 151 LKALQDELNSLLITEPCICGHGRSLVERTNQDRA--MEFLQGLNDRFSSIRSQILLIEPF 208
LK+L D L + V+ DR M L GL +++ I + I PF
Sbjct: 140 LKSLSDLLTN---------------VDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 184
Query: 209 PSILRIHSLIKQEE 222
PS S++ EE
Sbjct: 185 PSFTEARSMLLMEE 198