BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0720.1
(233 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G75670.2 | DNA-directed RNA polymerase | Chr1:28415378-284165... 239 3e-80
AT1G75670.1 | DNA-directed RNA polymerase | Chr1:28415378-284165... 239 3e-80
AT1G75670.3 | DNA-directed RNA polymerase | Chr1:28415661-284165... 194 3e-63
>AT1G75670.2 | DNA-directed RNA polymerase | Chr1:28415378-28416505
REVERSE LENGTH=196 | 201606
Length = 196
Score = 239 bits (610), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 150/194 (77%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGLK+S+A LM++IHPS++ V + I RELSSLLF++NE FDG +LAYD + +K AKI
Sbjct: 1 MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L+G+HP+FGV + +LLLF PKP +EGK+VK+ ESIH+IVL FS+A I + DIRE+F
Sbjct: 61 LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLDEEILHISGSLLPSNTGEIEWLDKHT 180
KY+++ GE F S+SHKRH +K+G+ +R V+S DEE++HI+GSLLP NTG ++WL+K +
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180
Query: 181 DEVSHLERSVKRER 194
+E +R KR +
Sbjct: 181 EEALPTDRDHKRRK 194
>AT1G75670.1 | DNA-directed RNA polymerase | Chr1:28415378-28416505
REVERSE LENGTH=196 | 201606
Length = 196
Score = 239 bits (610), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 150/194 (77%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGLK+S+A LM++IHPS++ V + I RELSSLLF++NE FDG +LAYD + +K AKI
Sbjct: 1 MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L+G+HP+FGV + +LLLF PKP +EGK+VK+ ESIH+IVL FS+A I + DIRE+F
Sbjct: 61 LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLDEEILHISGSLLPSNTGEIEWLDKHT 180
KY+++ GE F S+SHKRH +K+G+ +R V+S DEE++HI+GSLLP NTG ++WL+K +
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180
Query: 181 DEVSHLERSVKRER 194
+E +R KR +
Sbjct: 181 EEALPTDRDHKRRK 194
>AT1G75670.3 | DNA-directed RNA polymerase | Chr1:28415661-28416505
REVERSE LENGTH=156 | 201606
Length = 156
Score = 194 bits (494), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 121/155 (78%)
Query: 1 MEGLKVSDANLMVYIHPSRANKVREAILRELSSLLFKFNEIFDGAVLAYDVAIPNKNAKI 60
MEGLK+S+A LM++IHPS++ V + I RELSSLLF++NE FDG +LAYD + +K AKI
Sbjct: 1 MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60
Query: 61 LSGVHPFFGVNLKAKLLLFSPKPDMLLEGKVVKLEKESIHIIVLAFSSAAIMEEDIREDF 120
L+G+HP+FGV + +LLLF PKP +EGK+VK+ ESIH+IVL FS+A I + DIRE+F
Sbjct: 61 LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120
Query: 121 KYKIKHGEEVFASKSHKRHVIKVGSTVRFIVKSLD 155
KY+++ GE F S+SHKRH +K+G+ +R V+ L+
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQRLN 155