BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0730.1
(504 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 111 9e-26
ATMG00310.1 | RNA-directed DNA polymerase (reverse transcriptase... 70 5e-14
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 72 6e-13
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 72 6e-13
AT3G24255.3 | RNA-directed DNA polymerase (reverse transcriptase... 71 6e-13
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 111 bits (277), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 138 YPFHILKIPKHVLNHLEQLERNFWWGQTSNEHKMHFMNWNIISSSKDQGGLGIRKLEYVN 197
Y +PK V + + +FWW MH+ W+ +S K +GG+G + +E N
Sbjct: 6 YTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFN 65
Query: 198 ESLLAKTVWRLLNHPEAIWVQILKGEYYHSTDFWSSNSRKSHTPFWNSILQVKNTIHHNS 257
+LL K +WR+L+ PE++ ++ K Y+H +D ++ + W SI + + +
Sbjct: 66 LALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGA 125
Query: 258 HWLVGNGSEINILSDTWIPTTITQTPIIIMDLP-------NNIKKVSDLINQDSKTWKQD 310
+VGNG +I I W+ + + + +P ++I KVSDLI++ + W++D
Sbjct: 126 RAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKD 185
Query: 311 ILTQYFDQSSVQEIININIPSSRIISK----HTPTGKFTTKSYY 350
++ F + + I + RI+ +T +G +T KS Y
Sbjct: 186 VIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGY 229
>ATMG00310.1 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein | ChrM:90883-91347
REVERSE LENGTH=154 | 201606
Length = 154
Score = 70.1 bits (170), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 138 YPFHILKIPKHVLNHLEQLERNFWWGQTSNEHKMHFMNWNIISSSK-DQGGLGIRKLEYV 196
Y ++ K + L FWW N+ K+ ++ W + SK D GGLG R L +
Sbjct: 6 YAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWF 65
Query: 197 NESLLAKTVWRLLNHPEAIWVQILKGEYY-HSTDFWSS-NSRKSHTPFWNSILQVKNTIH 254
N++LLAK +R+++ P + ++L+ Y+ HS+ S +R S+ W SI+ + +
Sbjct: 66 NQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYA--WRSIIHGRELLS 123
Query: 255 HNSHWLVGNGSEINILSDTWIPTTITQTPI 284
+G+G + D WI + +TP+
Sbjct: 124 RGLLRTIGDGIHTKVWLDRWI---MDETPL 150
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 114 WIKKLVSQSGRTVLIKSVLNSYCQYPFHILKIPKHVLNHLEQLERNFWWGQTSNEHKMHF 173
W + +S +GR LI SV++S + ++P + ++ + +F W K
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169
Query: 174 MNWNIISSSKDQGGLGIRKLEYVNESLLAKTVWRLLNHPEAIWVQILKGEYYHSTDFWS- 232
+ W+ + + KD+GGLGIR L+ N+ L K +WR+L+ ++WVQ L+ FWS
Sbjct: 170 VAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSI 228
Query: 233 SNSRKSHTPFWNSILQ----VKNTIHHNSHWLVGNGSEINILSDTW 274
S + + W IL+ + H+ H NGS + D W
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIH----NGSNTSFWFDNW 270
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 114 WIKKLVSQSGRTVLIKSVLNSYCQYPFHILKIPKHVLNHLEQLERNFWWGQTSNEHKMHF 173
W + +S +GR LI SV++S + ++P + ++ + +F W K
Sbjct: 110 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 169
Query: 174 MNWNIISSSKDQGGLGIRKLEYVNESLLAKTVWRLLNHPEAIWVQILKGEYYHSTDFWS- 232
+ W+ + + KD+GGLGIR L+ N+ L K +WR+L+ ++WVQ L+ FWS
Sbjct: 170 VAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSI 228
Query: 233 SNSRKSHTPFWNSILQ----VKNTIHHNSHWLVGNGSEINILSDTW 274
S + + W IL+ + H+ H NGS + D W
Sbjct: 229 SGNTTLGSWMWKKILKHRALASGFVKHDIH----NGSNTSFWFDNW 270
>AT3G24255.3 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789471-8790907 FORWARD LENGTH=478 | 201606
Length = 478
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 114 WIKKLVSQSGRTVLIKSVLNSYCQYPFHILKIPKHVLNHLEQLERNFWWGQTSNEHKMHF 173
W + +S +GR LI SV++S + ++P + ++ + +F W K
Sbjct: 56 WTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAK 115
Query: 174 MNWNIISSSKDQGGLGIRKLEYVNESLLAKTVWRLLNHPEAIWVQILKGEYYHSTDFWS- 232
+ W+ + + KD+GGLGIR L+ N+ L K +WR+L+ ++WVQ L+ FWS
Sbjct: 116 VAWSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSI 174
Query: 233 SNSRKSHTPFWNSILQ----VKNTIHHNSHWLVGNGSEINILSDTW 274
S + + W IL+ + H+ H NGS + D W
Sbjct: 175 SGNTTLGSWMWKKILKHRALASGFVKHDIH----NGSNTSFWFDNW 216