BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0790.1
(113 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G62890.1 | Pentatricopeptide repeat (PPR) superfamily protein... 91 2e-22
AT1G74630.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 82 2e-19
AT1G74630.2 | Tetratricopeptide repeat (TPR)-like superfamily pr... 82 2e-19
AT1G14470.1 | Pentatricopeptide repeat (PPR) superfamily protein... 80 1e-18
AT1G13410.1 | Tetratricopeptide repeat (TPR)-like superfamily pr... 74 1e-16
>AT3G62890.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr3:23246168-23247973 FORWARD LENGTH=573 | 201606
Length = 573
Score = 91.3 bits (225), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 63/117 (53%), Gaps = 21/117 (17%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MYSSCG SA RVFD+ DLP WN V++ K G I+ ARKLFDE+PERNVISWSC+
Sbjct: 106 MYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCL 165
Query: 61 INGLGEDKDVMAWSAMISGLAMHGHNEEFFNLFLQMQ-----NHGVMPNNVQCSLIL 112
IN G M G +E +LF +MQ V PN S +L
Sbjct: 166 IN----------------GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVL 206
Score = 50.1 bits (118), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 22 DLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCMINGLGEDKDVMAWSAMISGLA 81
D+ L +I M K G +E A+++F N LG KDV A+SAMI LA
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVF---------------NALGSKKDVKAYSAMICCLA 277
Query: 82 MHGHNEEFFNLFLQMQNH-GVMPNNVQCSLIL 112
M+G +E F LF +M + PN+V IL
Sbjct: 278 MYGLTDECFQLFSEMTTSDNINPNSVTFVGIL 309
>AT1G74630.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:28030521-28032452 FORWARD LENGTH=643 |
201606
Length = 643
Score = 82.4 bits (202), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MY CGC + A +VFDE+ QP+L WN VI+ + + AR++FD++ RN SW+ M
Sbjct: 150 MYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVM 209
Query: 61 INGL---GE------------DKDVMAWSAMISGLAMHGHNEEFFNLFLQMQNHGVMPNN 105
+ G GE +D ++WS MI G+A +G E F F ++Q G+ PN
Sbjct: 210 LAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNE 269
Query: 106 VQCSLIL 112
V + +L
Sbjct: 270 VSLTGVL 276
Score = 52.8 bits (125), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 15/80 (18%)
Query: 27 NLVISMNVKMGYIEMARKLFDEVPERNVISWSCMINGLGEDKDVMAWSAMISGLAMHGHN 86
N +I M + G + MAR +F+ G+ E + +++W++MI+GLAMHG
Sbjct: 308 NALIDMYSRCGNVPMARLVFE---------------GMQEKRCIVSWTSMIAGLAMHGQG 352
Query: 87 EEFFNLFLQMQNHGVMPNNV 106
EE LF +M +GV P+ +
Sbjct: 353 EEAVRLFNEMTAYGVTPDGI 372
>AT1G74630.2 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:28030476-28032452 FORWARD LENGTH=658 |
201606
Length = 658
Score = 82.4 bits (202), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MY CGC + A +VFDE+ QP+L WN VI+ + + AR++FD++ RN SW+ M
Sbjct: 165 MYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVM 224
Query: 61 INGL---GE------------DKDVMAWSAMISGLAMHGHNEEFFNLFLQMQNHGVMPNN 105
+ G GE +D ++WS MI G+A +G E F F ++Q G+ PN
Sbjct: 225 LAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNE 284
Query: 106 VQCSLIL 112
V + +L
Sbjct: 285 VSLTGVL 291
Score = 52.8 bits (125), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 15/80 (18%)
Query: 27 NLVISMNVKMGYIEMARKLFDEVPERNVISWSCMINGLGEDKDVMAWSAMISGLAMHGHN 86
N +I M + G + MAR +F+ G+ E + +++W++MI+GLAMHG
Sbjct: 323 NALIDMYSRCGNVPMARLVFE---------------GMQEKRCIVSWTSMIAGLAMHGQG 367
Query: 87 EEFFNLFLQMQNHGVMPNNV 106
EE LF +M +GV P+ +
Sbjct: 368 EEAVRLFNEMTAYGVTPDGI 387
>AT1G14470.1 | Pentatricopeptide repeat (PPR) superfamily protein |
Chr1:4954080-4955702 FORWARD LENGTH=540 | 201606
Length = 540
Score = 80.5 bits (197), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 15/127 (11%)
Query: 1 MYSSCGCFDSAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCM 60
MY +SA +VFD+I Q WN++IS K G E A KLFD +PE +V+SW+ M
Sbjct: 145 MYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLFDMMPENDVVSWTVM 204
Query: 61 INGLGEDKD---------------VMAWSAMISGLAMHGHNEEFFNLFLQMQNHGVMPNN 105
I G + KD V++W+AM+SG A +G E+ LF M GV PN
Sbjct: 205 ITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNE 264
Query: 106 VQCSLIL 112
+++
Sbjct: 265 TTWVIVI 271
Score = 58.9 bits (141), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 MYSSCGCFDSAHRVFDEI-PQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSC 59
M++ C SA R+F+E+ Q +L WN +IS ++G + AR+LFD +P+RNV+SW+
Sbjct: 308 MHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVVSWNS 367
Query: 60 MINGLGED 67
+I G +
Sbjct: 368 LIAGYAHN 375
>AT1G13410.1 | Tetratricopeptide repeat (TPR)-like superfamily
protein | Chr1:4601526-4603174 FORWARD LENGTH=474 |
201606
Length = 474
Score = 74.3 bits (181), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 66/119 (55%), Gaps = 16/119 (13%)
Query: 10 SAHRVFDEIPQPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCMINGLGE--- 66
SA R FD P+ D+ LWN +IS ++MG + AR LFD++P R+V+SW+ ++ G
Sbjct: 77 SARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGD 136
Query: 67 ------------DKDVMAWSAMISGLAMHGHNEEFFNLFLQMQNHG-VMPNNVQCSLIL 112
+++V +W+ +I G A +G E F +M + G V+PN+ +L+L
Sbjct: 137 MEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVL 195
Score = 58.9 bits (141), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 16/88 (18%)
Query: 20 QPDLPLWNLVISMNVKMGYIEMARKLFDEVPERNVISWSCMINGLGEDKDVMAWSAMISG 79
+ D+ + N +I M K G IE+A ++F + R++ISW+ MING
Sbjct: 221 KVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMING---------------- 264
Query: 80 LAMHGHNEEFFNLFLQMQNHGVMPNNVQ 107
LA HGH E NLF +M+N G+ P+ V
Sbjct: 265 LAAHGHGTEALNLFHEMKNSGISPDKVT 292
Score = 46.2 bits (108), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 36 MGYIEMARKLFDEVPERNVISWSCMING---------------LGEDKDVMAWSAMISGL 80
MG I A K+F E+ E+NV+ W+ MING L ++D++ W+ MISG
Sbjct: 41 MGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGY 100
Query: 81 AMHGHNEEFFNLFLQMQNHGVMPNNV 106
G+ E +LF QM VM N
Sbjct: 101 IEMGNMLEARSLFDQMPCRDVMSWNT 126