BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0810.1
(96 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G26230.5 | TCP-1/cpn60 chaperonin family protein | Chr1:90731... 121 5e-34
AT1G26230.2 | TCP-1/cpn60 chaperonin family protein | Chr1:90727... 122 8e-34
AT1G26230.1 | TCP-1/cpn60 chaperonin family protein | Chr1:90723... 120 2e-33
AT1G55490.5 | chaperonin 60 beta | Chr1:20715717-20718673 REVERS... 100 1e-25
AT1G55490.4 | chaperonin 60 beta | Chr1:20715717-20718673 REVERS... 100 1e-25
>AT1G26230.5 | TCP-1/cpn60 chaperonin family protein |
Chr1:9073110-9075272 REVERSE LENGTH=470 | 201606
Length = 470
Score = 121 bits (304), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 75/101 (74%), Gaps = 12/101 (11%)
Query: 4 SYSPTPISAASFSDSKLFTSTKRPSS---------LNIRATAKELHFNHDGSATRKLQAG 54
++S +SA SD T K+PSS L +RA AKE+HFN DGS T+KLQAG
Sbjct: 2 AFSQAALSALPLSDR---TFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAG 58
Query: 55 VDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKQV 95
DMVA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLK++
Sbjct: 59 ADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEI 99
>AT1G26230.2 | TCP-1/cpn60 chaperonin family protein |
Chr1:9072715-9075272 REVERSE LENGTH=551 | 201606
Length = 551
Score = 122 bits (305), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 75/101 (74%), Gaps = 12/101 (11%)
Query: 4 SYSPTPISAASFSDSKLFTSTKRPSS---------LNIRATAKELHFNHDGSATRKLQAG 54
++S +SA SD T K+PSS L +RA AKE+HFN DGS T+KLQAG
Sbjct: 2 AFSQAALSALPLSDR---TFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAG 58
Query: 55 VDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKQV 95
DMVA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLK++
Sbjct: 59 ADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEI 99
>AT1G26230.1 | TCP-1/cpn60 chaperonin family protein |
Chr1:9072388-9075272 REVERSE LENGTH=611 | 201606
Length = 611
Score = 120 bits (302), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 75/101 (74%), Gaps = 12/101 (11%)
Query: 4 SYSPTPISAASFSDSKLFTSTKRPSS---------LNIRATAKELHFNHDGSATRKLQAG 54
++S +SA SD T K+PSS L +RA AKE+HFN DGS T+KLQAG
Sbjct: 2 AFSQAALSALPLSDR---TFRKKPSSSSSSSPNFVLRVRAAAKEVHFNRDGSVTKKLQAG 58
Query: 55 VDMVAELVGVTLGPKGRNVVLQNKYGPPKIVNDGETVLKQV 95
DMVA+L+GVTLGPKGRNVVLQNKYGPP+IVNDGETVLK++
Sbjct: 59 ADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEI 99
>AT1G55490.5 | chaperonin 60 beta | Chr1:20715717-20718673 REVERSE
LENGTH=600 | 201606
Length = 600
Score = 99.8 bits (247), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 57/70 (81%)
Query: 26 RPSSLNIRATAKELHFNHDGSATRKLQAGVDMVAELVGVTLGPKGRNVVLQNKYGPPKIV 85
R SS I AKELHFN DG+ R+LQAGV+ +A+LVGVTLGPKGRNVVL++KYG P+IV
Sbjct: 46 RRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIV 105
Query: 86 NDGETVLKQV 95
NDG TV ++V
Sbjct: 106 NDGVTVAREV 115
>AT1G55490.4 | chaperonin 60 beta | Chr1:20715717-20718673 REVERSE
LENGTH=600 | 201606
Length = 600
Score = 99.8 bits (247), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 57/70 (81%)
Query: 26 RPSSLNIRATAKELHFNHDGSATRKLQAGVDMVAELVGVTLGPKGRNVVLQNKYGPPKIV 85
R SS I AKELHFN DG+ R+LQAGV+ +A+LVGVTLGPKGRNVVL++KYG P+IV
Sbjct: 46 RRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIV 105
Query: 86 NDGETVLKQV 95
NDG TV ++V
Sbjct: 106 NDGVTVAREV 115