BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0860.1
(661 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 207 2e-56
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 207 2e-56
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 129 1e-33
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 127 1e-33
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 70 3e-14
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 207 bits (528), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 5/248 (2%)
Query: 279 EPKTFSQALKQEHWRKAMKEEITALHKNRTWSLVSPSPNSNIVDCKWIFKVKQKSDGIIQ 338
EP T+++A + W AM +EI A+ TW + + PN + CKW++K+K SDG I+
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 339 RHKARLVARGYSQQHGVDYEETYSLVVRPATIRSIISLAVTGNWPIKQLDVKNAFLNGDL 398
R+KARLVA+GY+QQ G+D+ ET+S V + +++ I++++ N+ + QLD+ NAFLNGDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 399 HETVYMSKPKGFENPSN----PNLVCKLHKALYGLKQAPRVWHHQFTSCVLQLGFQQSIS 454
E +YM P G+ PN VC L K++YGLKQA R W +F+ ++ GF QS S
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 455 DPSMSYHTSSTKLIVLLIYVDDILITSSSHTLLSRLIENLKRRFEMTDLGALQY-LNLTR 513
D + ++T + +L+YVDDI+I S++ + L LK F++ DLG L+Y L L
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 514 PDISYGVN 521
+ G+N
Sbjct: 325 ARSAAGIN 332
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%)
Query: 503 LGALQYLNLTRPDISYGVNQISKFMSSPTNIHLIAAKRIFRYLKGSLDDGLCFRRATSHS 562
+G L YL +TR DIS+ VN++S+F +P H A +I Y+KG++ GL +
Sbjct: 382 IGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQ 441
Query: 563 LIGYSDADWAGSPDDRRSTYGYGVFIGPNLVAWASKIQPTVARSSTEAEYREVAHTTAEI 622
L +SDA + D RRST GY +F+G +L++W SK Q V++SS EAEYR ++ T E+
Sbjct: 442 LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEM 501
Query: 623 IWLRNLLNELGISSSPTPVIYCDNISTTYLTINPIL 658
+WL EL + S +++CDN + ++ N +
Sbjct: 502 MWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 207 bits (528), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 5/248 (2%)
Query: 279 EPKTFSQALKQEHWRKAMKEEITALHKNRTWSLVSPSPNSNIVDCKWIFKVKQKSDGIIQ 338
EP T+++A + W AM +EI A+ TW + + PN + CKW++K+K SDG I+
Sbjct: 85 EPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIE 144
Query: 339 RHKARLVARGYSQQHGVDYEETYSLVVRPATIRSIISLAVTGNWPIKQLDVKNAFLNGDL 398
R+KARLVA+GY+QQ G+D+ ET+S V + +++ I++++ N+ + QLD+ NAFLNGDL
Sbjct: 145 RYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDL 204
Query: 399 HETVYMSKPKGFENPSN----PNLVCKLHKALYGLKQAPRVWHHQFTSCVLQLGFQQSIS 454
E +YM P G+ PN VC L K++YGLKQA R W +F+ ++ GF QS S
Sbjct: 205 DEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHS 264
Query: 455 DPSMSYHTSSTKLIVLLIYVDDILITSSSHTLLSRLIENLKRRFEMTDLGALQY-LNLTR 513
D + ++T + +L+YVDDI+I S++ + L LK F++ DLG L+Y L L
Sbjct: 265 DHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324
Query: 514 PDISYGVN 521
+ G+N
Sbjct: 325 ARSAAGIN 332
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 92/156 (58%)
Query: 503 LGALQYLNLTRPDISYGVNQISKFMSSPTNIHLIAAKRIFRYLKGSLDDGLCFRRATSHS 562
+G L YL +TR DIS+ VN++S+F +P H A +I Y+KG++ GL +
Sbjct: 382 IGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQAEMQ 441
Query: 563 LIGYSDADWAGSPDDRRSTYGYGVFIGPNLVAWASKIQPTVARSSTEAEYREVAHTTAEI 622
L +SDA + D RRST GY +F+G +L++W SK Q V++SS EAEYR ++ T E+
Sbjct: 442 LQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEM 501
Query: 623 IWLRNLLNELGISSSPTPVIYCDNISTTYLTINPIL 658
+WL EL + S +++CDN + ++ N +
Sbjct: 502 MWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVF 537
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 129 bits (325), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%)
Query: 503 LGALQYLNLTRPDISYGVNQISKFMSSPTNIHLIAAKRIFRYLKGSLDDGLCFRRATSHS 562
+GALQYL LTRPDISY VN + + M PT KR+ RY+KG++ GL + + +
Sbjct: 104 VGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN 163
Query: 563 LIGYSDADWAGSPDDRRSTYGYGVFIGPNLVAWASKIQPTVARSSTEAEYREVAHTTAEI 622
+ + D+DWAG RRST G+ F+G N+++W++K QPTV+RSSTE EYR +A T AE+
Sbjct: 164 VQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAEL 223
Query: 623 IW 624
W
Sbjct: 224 TW 225
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 468 IVLLIYVDDILITSSSHTLLSRLIENLKRRFEMTDLGALQYL 509
+ LL+YVDDIL+T SS+TLL+ LI L F M DLG + Y
Sbjct: 1 MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYF 42
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 127 bits (318), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 87/125 (69%), Gaps = 2/125 (1%)
Query: 255 MVNRTRDGTRK--PKILLSTTTSLFDEPKTFSQALKQEHWRKAMKEEITALHKNRTWSLV 312
M+ R++ G K PK L+ TT++ EPK+ ALK W +AM+EE+ AL +N+TW LV
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60
Query: 313 SPSPNSNIVDCKWIFKVKQKSDGIIQRHKARLVARGYSQQHGVDYEETYSLVVRPATIRS 372
P N NI+ CKW+FK K SDG + R KARLVA+G+ Q+ G+ + ETYS VVR ATIR+
Sbjct: 61 PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120
Query: 373 IISLA 377
I+++A
Sbjct: 121 ILNVA 125
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 69.7 bits (169), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 508 YLNLTRPDISYGVNQISKFMSSPTNIHLIAAKRIFRYLKGSLDDGLCFRRATSHSLIGYS 567
YL +TRPD+++ VN++S+F S+ + A ++ Y+KG++ GL + + L ++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 568 DADWAGSPDDRRSTYGY 584
D+DWA PD RRS G+
Sbjct: 62 DSDWASCPDTRRSVTGF 78