BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0870.1
(308 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 4e-16
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 79 4e-16
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 61 1e-10
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 54 3e-09
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Query: 37 YASAVGSLMYAMVCTRPDISQAVSVVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGG 96
Y +G LMY + TR DIS AV+ +S+F+ P H +AV ++L Y+KGT GL +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 97 DT-CQVSGYVDSDYAGDLDRRRSTASYVFRV----------------------------H 127
Q+ + D+ + D RRST Y +
Sbjct: 437 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496
Query: 128 GAPEALWLWGLLDDLGIN-QECVDVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRD 183
E +WL +L + + ++CD+ +AIH+A N V H RTKHI+ H VR+
Sbjct: 497 ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 31/177 (17%)
Query: 37 YASAVGSLMYAMVCTRPDISQAVSVVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGG 96
Y +G LMY + TR DIS AV+ +S+F+ P H +AV ++L Y+KGT GL +
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 436
Query: 97 DT-CQVSGYVDSDYAGDLDRRRSTASYVFRV----------------------------H 127
Q+ + D+ + D RRST Y +
Sbjct: 437 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496
Query: 128 GAPEALWLWGLLDDLGIN-QECVDVWCDSQSAIHLAKNQVHHARTKHIDVRYHFVRD 183
E +WL +L + + ++CD+ +AIH+A N V H RTKHI+ H VR+
Sbjct: 497 ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 37 YASAVGSLMYAMVCTRPDISQAVSVVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGG 96
+ S VG+L Y + TRPDIS AV++V + P ++ +KRVLRY+KGT GL
Sbjct: 100 FRSIVGALQY-LTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 158
Query: 97 DT-CQVSGYVDSDYAGDLDRRRSTASY 122
++ V + DSD+AG RRST +
Sbjct: 159 NSKLNVQAFCDSDWAGCTSTRRSTTGF 185
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 54.3 bits (129), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 45 MYAMVCTRPDISQAVSVVSRFTANPGKTHWEAVKRVLRYLKGTANTGLCFGGDT-CQVSG 103
MY + TRPD++ AV+ +S+F++ +AV +VL Y+KGT GL + + Q+
Sbjct: 1 MY-LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 104 YVDSDYAGDLDRRRSTASYVFRVHGAPEALWLWGLL 139
+ DSD+A D RRS + V LW G L
Sbjct: 60 FADSDWASCPDTRRSVTGFCSLV-----PLWFLGAL 90