BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0890.1
(192 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G12560.3 | F-box and associated interaction domains-containin... 74 2e-15
AT4G12560.2 | F-box and associated interaction domains-containin... 74 2e-15
AT4G12560.1 | F-box and associated interaction domains-containin... 74 2e-15
AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWAR... 55 5e-09
AT4G22390.2 | F-box associated ubiquitination effector family pr... 51 1e-07
>AT4G12560.3 | F-box and associated interaction domains-containing
protein | Chr4:7441815-7443157 FORWARD LENGTH=413 |
201606
Length = 413
Score = 73.9 bits (180), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 14 GVFLNGALHWIATPAVGGRWTKVSCTIILSFDVVDERFSEVPLHEKLNTKTLSPLIHLNV 73
GV +LHW+ G ++ +I+ FD+ E F V E + + + + V
Sbjct: 212 GVLAGNSLHWVLPRRPG----LIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGV 267
Query: 74 LGECLCVFDNIREVHTEVWVMKE---REDWIKLFTITRDNVIKSITYMNPLKCLNNGDVL 130
L CLC+ N + + +VW+MKE R+ W K+FT+ + +KS +YM PL + +
Sbjct: 268 LDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKV 327
Query: 131 MICSGWNDLVLYDPKHKKCTISKLSDMPICFDLVASVGTLV 171
++ LV +D + KK + ++ D P + V +LV
Sbjct: 328 LLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV 368
>AT4G12560.2 | F-box and associated interaction domains-containing
protein | Chr4:7441815-7443157 FORWARD LENGTH=413 |
201606
Length = 413
Score = 73.9 bits (180), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 14 GVFLNGALHWIATPAVGGRWTKVSCTIILSFDVVDERFSEVPLHEKLNTKTLSPLIHLNV 73
GV +LHW+ G ++ +I+ FD+ E F V E + + + + V
Sbjct: 212 GVLAGNSLHWVLPRRPG----LIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGV 267
Query: 74 LGECLCVFDNIREVHTEVWVMKE---REDWIKLFTITRDNVIKSITYMNPLKCLNNGDVL 130
L CLC+ N + + +VW+MKE R+ W K+FT+ + +KS +YM PL + +
Sbjct: 268 LDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKV 327
Query: 131 MICSGWNDLVLYDPKHKKCTISKLSDMPICFDLVASVGTLV 171
++ LV +D + KK + ++ D P + V +LV
Sbjct: 328 LLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV 368
>AT4G12560.1 | F-box and associated interaction domains-containing
protein | Chr4:7441815-7443157 FORWARD LENGTH=413 |
201606
Length = 413
Score = 73.9 bits (180), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 14 GVFLNGALHWIATPAVGGRWTKVSCTIILSFDVVDERFSEVPLHEKLNTKTLSPLIHLNV 73
GV +LHW+ G ++ +I+ FD+ E F V E + + + + V
Sbjct: 212 GVLAGNSLHWVLPRRPG----LIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGV 267
Query: 74 LGECLCVFDNIREVHTEVWVMKE---REDWIKLFTITRDNVIKSITYMNPLKCLNNGDVL 130
L CLC+ N + + +VW+MKE R+ W K+FT+ + +KS +YM PL + +
Sbjct: 268 LDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKV 327
Query: 131 MICSGWNDLVLYDPKHKKCTISKLSDMPICFDLVASVGTLV 171
++ LV +D + KK + ++ D P + V +LV
Sbjct: 328 LLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV 368
>AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWARD
LENGTH=427 | 201606
Length = 427
Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 29/185 (15%)
Query: 3 NIHYKILGG--TNGVFLNGALHWIATPAVGGRWTKVSCTIILSFDVVDERFSEVPLHEKL 60
N++Y+ G T+GV NGA+HW+ T ++ + ++++FD+ E F E+P+ ++
Sbjct: 255 NLNYEHNDGSYTSGVHFNGAIHWVFTE------SRHNQRVVVAFDIQTEEFREMPVPDEA 308
Query: 61 N--TKTLSPLIHLNVLGECLCVFDNIREVHTEVWVMKEREDWIKLFTITRDNVIKSITYM 118
+ S + + L LCV ++ +VH ++WVM E + K ++ R N++ M
Sbjct: 309 EDCSHRFSNFV-VGSLNGRLCVVNSCYDVHDDIWVMSEYGE-AKSWSRIRINLL--YRSM 364
Query: 119 NPL-KCLNNGDVLMICSGWNDLVLYDPKHKKCTISKLSDMPIC-------FDLVASVGTL 170
PL N+ +VL+ G DLVLY+ + S++ IC F+ V +L
Sbjct: 365 KPLCSTKNDEEVLLELDG--DLVLYN-----FETNASSNLGICGVKLSDGFEANTYVESL 417
Query: 171 VSLNS 175
+S NS
Sbjct: 418 ISPNS 422
>AT4G22390.2 | F-box associated ubiquitination effector family
protein | Chr4:11813757-11815074 REVERSE LENGTH=401 |
201606
Length = 401
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 11/143 (7%)
Query: 14 GVFLNGALHWIATPAVGGRWTKVSCTIILSFDVVDERFSEVPLHEKLNTKTLSPLIHLNV 73
GV +N LHWI + R ++ I+ +D+ + + ++L + + + V
Sbjct: 211 GVVVNNHLHWI----LPRRQGVIAFNAIIKYDLASDDIGVLSFPQEL---YIEDNMDIGV 263
Query: 74 LGECLCVFDNIREVHTEVWVMKERED---WIKLFTITRDNVIKSITYMNPLKC-LNNGDV 129
L C+C+ H +VWV+KE ED W KL+ + + ++S+ ++ PL C + +
Sbjct: 264 LDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKI 323
Query: 130 LMICSGWNDLVLYDPKHKKCTIS 152
L+ + +L+ +D + + T +
Sbjct: 324 LLEINNAANLMWFDLESQSLTTA 346