BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0900.1
(183 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47790.1 | F-box and associated interaction domains-containin... 67 2e-13
AT1G50870.1 | F-box and associated interaction domains-containin... 66 7e-13
AT3G10240.1 | F-box and associated interaction domains-containin... 63 1e-11
AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWAR... 60 1e-10
AT3G22730.1 | F-box and associated interaction domains-containin... 59 3e-10
>AT1G47790.1 | F-box and associated interaction domains-containing
protein | Chr1:17600004-17601173 REVERSE LENGTH=389 |
201606
Length = 389
Score = 67.4 bits (163), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 6 DAITTILAMLPVKSIHRFRSVSKTWLSLFSNPYFIKLHCNYAVQQNKFSLLIKQSDKLCS 65
D + IL LPVKS+ RFR VSK W S+ ++PYFIK + + + KQSDKL
Sbjct: 28 DLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKLFV 87
Query: 66 IG-----YDSLASNKPLNLIDYPFISFKPKLHF---VGSCNGLVAFTCDHRIHLWNPSTN 117
YDS +S++ ID + + + S +GL+ F + +WNPS
Sbjct: 88 FSIPKHHYDSNSSSQA--AIDRFQVKLPQEFSYPSPTESVHGLICFHVLATVIVWNPSMR 145
Query: 118 EYSVLPAPPSPQKPKLRSVGVSCGFGYD 145
++ LP P K ++ GYD
Sbjct: 146 QFLTLPKPRKSWKE------LTVFLGYD 167
>AT1G50870.1 | F-box and associated interaction domains-containing
protein | Chr1:18855147-18856337 FORWARD LENGTH=396 |
201606
Length = 396
Score = 66.2 bits (160), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 15/148 (10%)
Query: 6 DAITTILAMLPVKSIHRFRSVSKTWLSLFSNPYFIKLHCNYAVQQNKFSLLIKQSDKLCS 65
D I IL LPVKS+ RFR VSK WLS ++PYF + + + + K DKL
Sbjct: 34 DLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSYEARSSTRPSLLMFFKNKDKLFV 93
Query: 66 IGY-----DSLASNKPLNLIDYPFISFKPK---LHFVGSCNGLVAFTCDHRIHLWNPSTN 117
+ +S ++ +D I + PK F S +GL++F + +WNP+
Sbjct: 94 FTFPHHNQNSKETHSYSQHVDSYHIKY-PKYCCFPFTESVHGLISFRISTKPIIWNPTMR 152
Query: 118 EYSVLPAPPSPQKPKLRSVGVSCGFGYD 145
++ +LP P K G+S GYD
Sbjct: 153 QFLILPKPEKSWK------GLSVFLGYD 174
>AT3G10240.1 | F-box and associated interaction domains-containing
protein | Chr3:3166698-3167867 FORWARD LENGTH=389 |
201606
Length = 389
Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 6 DAITTILAMLPVKSIHRFRSVSKTWLSLFSNPYFIKLHCNYAVQQNKFSLLIKQSDK--L 63
D ++ IL LP KS+ RFR VSK W S+ + PYFI L + + L K ++K +
Sbjct: 30 DLVSEILLRLPEKSVARFRCVSKPWSSITTEPYFINL---LTTRSPRLLLCFKANEKFFV 86
Query: 64 CSI-----GYDSL-ASNKPLNLIDYPFISFKPKLHF---VGSCNGLVAFTCDHRIHLWNP 114
SI +++ S+ LID + F ++++ S NGL+ F R+ +WNP
Sbjct: 87 SSIPQHRQTFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQESARLIVWNP 146
Query: 115 STNEYSVLPAPPSPQKPKLRSVGVSCGFGYD 145
ST + +LP KP S ++ GYD
Sbjct: 147 STRQLLILP------KPNGNSNDLTIFLGYD 171
>AT3G06240.1 | F-box family protein | Chr3:1887336-1888619 FORWARD
LENGTH=427 | 201606
Length = 427
Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 1 MILSDDAITTILAMLPVKSIHRFRSVSKTWLSLFSNPYFIKLHCNYAVQQNKF-SL---L 56
++L + IT IL LP KSI RFR VSK + +L S+P F K+H + ++ SL L
Sbjct: 34 LVLPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKL 93
Query: 57 IKQSDKLCSIGYDSLAS----------NKPL-----------------NLIDYPFISFKP 89
I S L S+ ++S+ N PL +L D + K
Sbjct: 94 IVSSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKL 153
Query: 90 K--------LHFVGSCNGLVAFT-CDHRIHLWNPSTNEYSVLPAPPSPQKPKL-RSVGVS 139
+ VGS NGLV + + + L+NP+T + LP P+ + R +
Sbjct: 154 NAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQT 213
Query: 140 CGFGYDCKLDDYK 152
GFG+D DDYK
Sbjct: 214 YGFGFDGLTDDYK 226
>AT3G22730.1 | F-box and associated interaction domains-containing
protein | Chr3:8031341-8032459 REVERSE LENGTH=372 |
201606
Length = 372
Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 1 MILSD---DAITTILAMLPVKSIHRFRSVSKTWLSLFSNPYFIKLHCNYAVQQNKFSLLI 57
M++SD D + IL+ +P S+ R RS K W +LF NP F K A +++ +L
Sbjct: 1 MMMSDLSLDLVEEILSRVPATSLKRLRSTCKLWNALFKNPGFTKKQFLKAPKESLVLMLK 60
Query: 58 KQSDKLC------SIGYDSLASNKPLNLIDYPFISFKPKLHFVGSCNG-LVAFTCDHRIH 110
+ S +C S+ S+ LNL +YP S + +H C+G L+ T D+RI
Sbjct: 61 EYS--VCPMIANLSVSAPSIEFKGALNLKNYPPYSEEVDIHEACHCDGLLLCTTMDYRIV 118
Query: 111 LWNPSTNEYSVLPAP 125
+WNP E + P
Sbjct: 119 VWNPCLGETRWIRWP 133