BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0910.1
(265 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 87 3e-19
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 65 8e-12
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 55 8e-09
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 86.7 bits (213), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 13 NYIVCKSLFLPILKKYKVLDLIEGTRPCPSKFVDDKGSSSPIINQSYIDWIEEDQSLPIW 72
NY V + LF + + VL I+G+ P+ + + W E D + +W
Sbjct: 32 NYDVWRELFETLCLSFGVLGHIDGSS-TPTPMTEKR-------------WKERDGLVKMW 77
Query: 73 LNSTLSDSIIPYVAGIT-SSRDLWLNLEENFATSSTAHVLQLQNQLREITKGNLTVPEYL 131
+ T++DS++ + + ++RDLWL+LE F + A LQ +N+LR T +L+V EY
Sbjct: 78 IYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYC 137
Query: 132 GRIKKITDGLVAAGSPCSKNEVIITMLRGLPSEYDVFCAAIRVRIPPVTINELHNLLVSE 191
++K ++D L SP S +++ +L GL +YD I+ + P + E ++L+ E
Sbjct: 138 QKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLME 197
Query: 192 EIIVSNKIKRSSDSVNQAFLVSSNEISQIEVLMTTRSIKEEVAVASHNN 240
E +SNK K S N L + VL T +E HNN
Sbjct: 198 ESRLSNKSKSSLSHTNHPSLSN--------VLFTVPRQQERYPQEYHNN 238
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 64.7 bits (156), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 17/199 (8%)
Query: 13 NYIVCKSLFLPILKKYKVLDLIEGTRPCPSKFVDDKGSSSPIINQSYIDWIEEDQSLPIW 72
NY + LFL + V+ I+GT P+ N + ++W + D + +
Sbjct: 30 NYDAWRELFLTHCLSFDVMGHIDGTL-LPT-------------NANDVNWQKRDGIVKLS 75
Query: 73 LNSTLSDSII--PYVAGITSSRDLWLNLEENFATSSTAHVLQLQNQLREITKGNLTVPEY 130
L TL+ +V TS RD+WL ++ F + A L+L ++LR G++ V +Y
Sbjct: 76 LYGTLTPKQFQGSFVTSSTS-RDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADY 134
Query: 131 LGRIKKITDGLVAAGSPCSKNEVIITMLRGLPSEYDVFCAAIRVRIPPVTINELHNLLVS 190
++KK+ D L P + +++ +L GL ++D I+ R P + ++ +L
Sbjct: 135 YRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQE 194
Query: 191 EEIIVSNKIKRSSDSVNQA 209
EE + IK + V+ +
Sbjct: 195 EEDRLKRAIKPNPTHVDHS 213
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 55.1 bits (131), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 12 DNYIVCKSLFLPILKKYKVLDLIEGTRPCPSKFVDDKGSSSPIINQSYIDWIEEDQSLPI 71
DNY+ K F L+ K I+GT P P F SP+ Y W + + +
Sbjct: 40 DNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPF-------SPL----YQPWEQCNAMVMY 88
Query: 72 WLNSTLSDSIIPYVAGITSSRDLWLNLEENFATSSTAHVLQLQNQLREITKGNLTVPEYL 131
WL ++++D ++ V ++ +W +L F + QL+ +L + +G +V EY
Sbjct: 89 WLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYF 148
Query: 132 GRIKKI 137
G++ K+
Sbjct: 149 GKLSKV 154