BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g0940.1
(449 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 313 6e-97
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 313 6e-97
ATMG00810.1 | DNA/RNA polymerases superfamily protein | ChrM:227... 131 3e-35
ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymeras... 81 1e-17
ATMG00240.1 | Gag-Pol-related retrotransposon family protein | C... 53 1e-08
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 313 bits (803), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 168/449 (37%), Positives = 270/449 (60%), Gaps = 14/449 (3%)
Query: 8 NTWKFVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKARLVAKGIRQKEGRDFFDTYSPVSR 67
+TW+ LPP K IG KW++K K DGT+E+YKARLVAKG Q+EG DF +T+SPV +
Sbjct: 113 HTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCK 172
Query: 68 ITSIRILIAIAGIYNLEIHQMDVKTAFLNGELEEEIYMDQPEGFMVKGLE----NKVCKL 123
+TS+++++AI+ IYN +HQ+D+ AFLNG+L+EEIYM P G+ + + N VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232
Query: 124 IKSLHGLKQTPKQWHEKFDQIVLENGFKINESDICEYTKCVNGCYVIICLYVDDMLILGT 183
KS++GLKQ +QW KF ++ GF + SD + K ++ + +YVDD++I
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292
Query: 184 SLEIINQTKELLIKNFEMKDLGQADVILGIKLIRKPEGIALSQTHYIEFVLRKFNQFDSS 243
+ +++ K L F+++DLG LG+++ R GI + Q Y +L +
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCK 352
Query: 244 PARVPFDHSLVLKK-SKTEAVSQLEYSRVIGSLMYIMNCTRPDIAYAVSKLSRYTCNPGK 302
P+ VP D S+ S + V Y R+IG LMY + TR DI++AV+KLS+++ P
Sbjct: 353 PSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRL 411
Query: 303 THWDALIKVLRYLKYTLSHSLHYSRYPAV-LEGYTDANWISDSEESKSTSGFVFTLAGAA 361
H A++K+L Y+K T+ L YS + L+ ++DA++ S + +ST+G+ L +
Sbjct: 412 AHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSL 471
Query: 362 VAWKSSKQTCIARSTMESEFIALDKAAEEAEWIRSFLDDIPIWPKPMPSILIHCDSTAAI 421
++WKS KQ +++S+ E+E+ AL A +E W+ F ++ + P P++L CD+TAAI
Sbjct: 472 ISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PLSKPTLLF-CDNTAAI 529
Query: 422 AKAKNNIYNVKSRHI---CR--RHKSIKQ 445
A N +++ +++HI C R +S+ Q
Sbjct: 530 HIATNAVFHERTKHIESDCHSVRERSVYQ 558
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 313 bits (803), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 168/449 (37%), Positives = 270/449 (60%), Gaps = 14/449 (3%)
Query: 8 NTWKFVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKARLVAKGIRQKEGRDFFDTYSPVSR 67
+TW+ LPP K IG KW++K K DGT+E+YKARLVAKG Q+EG DF +T+SPV +
Sbjct: 113 HTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCK 172
Query: 68 ITSIRILIAIAGIYNLEIHQMDVKTAFLNGELEEEIYMDQPEGFMVKGLE----NKVCKL 123
+TS+++++AI+ IYN +HQ+D+ AFLNG+L+EEIYM P G+ + + N VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232
Query: 124 IKSLHGLKQTPKQWHEKFDQIVLENGFKINESDICEYTKCVNGCYVIICLYVDDMLILGT 183
KS++GLKQ +QW KF ++ GF + SD + K ++ + +YVDD++I
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292
Query: 184 SLEIINQTKELLIKNFEMKDLGQADVILGIKLIRKPEGIALSQTHYIEFVLRKFNQFDSS 243
+ +++ K L F+++DLG LG+++ R GI + Q Y +L +
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCK 352
Query: 244 PARVPFDHSLVLKK-SKTEAVSQLEYSRVIGSLMYIMNCTRPDIAYAVSKLSRYTCNPGK 302
P+ VP D S+ S + V Y R+IG LMY + TR DI++AV+KLS+++ P
Sbjct: 353 PSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAVNKLSQFSEAPRL 411
Query: 303 THWDALIKVLRYLKYTLSHSLHYSRYPAV-LEGYTDANWISDSEESKSTSGFVFTLAGAA 361
H A++K+L Y+K T+ L YS + L+ ++DA++ S + +ST+G+ L +
Sbjct: 412 AHQQAVMKILHYIKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSL 471
Query: 362 VAWKSSKQTCIARSTMESEFIALDKAAEEAEWIRSFLDDIPIWPKPMPSILIHCDSTAAI 421
++WKS KQ +++S+ E+E+ AL A +E W+ F ++ + P P++L CD+TAAI
Sbjct: 472 ISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQL-PLSKPTLLF-CDNTAAI 529
Query: 422 AKAKNNIYNVKSRHI---CR--RHKSIKQ 445
A N +++ +++HI C R +S+ Q
Sbjct: 530 HIATNAVFHERTKHIESDCHSVRERSVYQ 558
>ATMG00810.1 | DNA/RNA polymerases superfamily protein |
ChrM:227709-228431 REVERSE LENGTH=240 | 201606
Length = 240
Score = 131 bits (329), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 2/224 (0%)
Query: 171 ICLYVDDMLILGTSLEIINQTKELLIKNFEMKDLGQADVILGIKLIRKPEGIALSQTHYI 230
+ LYVDD+L+ G+S ++N L F MKDLG LGI++ P G+ LSQT Y
Sbjct: 3 LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62
Query: 231 EFVLRKFNQFDSSPARVPFDHSLVLKKSKTEAVSQLEYSRVIGSLMYIMNCTRPDIAYAV 290
E +L D P P L S + ++ ++G+L Y + TRPDI+YAV
Sbjct: 63 EQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQY-LTLTRPDISYAV 121
Query: 291 SKLSRYTCNPGKTHWDALIKVLRYLKYTLSHSLHYSRYPAV-LEGYTDANWISDSEESKS 349
+ + + P +D L +VLRY+K T+ H L+ + + ++ + D++W + +S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 350 TSGFVFTLAGAAVAWKSSKQTCIARSTMESEFIALDKAAEEAEW 393
T+GF L ++W + +Q ++RS+ E+E+ AL A E W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>ATMG00820.1 | Reverse transcriptase (RNA-dependent DNA polymerase)
| ChrM:228573-229085 REVERSE LENGTH=170 | 201606
Length = 170
Score = 80.9 bits (198), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 1 MDSIIQNNTWKFVDLPPGSKTIGSKWIFKRKRKPDGTVEKYKARLVAKGIRQKEGRDFFD 60
+D++ +N TW V P +G KW+FK K DGT+++ KARLVAKG Q+EG F +
Sbjct: 48 LDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVE 107
Query: 61 TYSPVSRITSIRILIAIAGIYNLEIHQ 87
TYSPV R +IR ++ +A LE+ Q
Sbjct: 108 TYSPVVRTATIRTILNVA--QQLEVGQ 132
>ATMG00240.1 | Gag-Pol-related retrotransposon family protein |
ChrM:68918-69253 REVERSE LENGTH=111 | 201606
Length = 111
Score = 53.1 bits (126), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 276 MYIMNCTRPDIAYAVSKLSRYTCNPGKTHWDALIKVLRYLKYTLSHSLHYSRYPAV-LEG 334
MY + TRPD+ +AV++LS+++ A+ KVL Y+K T+ L YS + L+
Sbjct: 1 MY-LTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 59
Query: 335 YTDANWISDSEESKSTSGF 353
+ D++W S + +S +GF
Sbjct: 60 FADSDWASCPDTRRSVTGF 78