BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000117.1_g0990.1
         (138 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38790.1 | hypothetical protein | Chr5:15533785-15534180 FORW...    52   3e-09

>AT5G38790.1 | hypothetical protein | Chr5:15533785-15534180
          FORWARD LENGTH=131 | 201606
          Length = 131

 Score = 52.4 bits (124), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 12/69 (17%)

Query: 9  EECSSSESGWTMYIASPM---DEDDNDDDPSDDGNSKDNYD---------DNDTDDSMAS 56
          EECSSSESGWT Y++SP+   +++  D+D   +G +  NY          + D+DDSMAS
Sbjct: 4  EECSSSESGWTTYLSSPIKVDEDEVVDEDYYYEGYNIYNYSSKVEHEEERNKDSDDSMAS 63

Query: 57 DASSGPNNQ 65
          DASSGPN Q
Sbjct: 64 DASSGPNYQ 72


Top