BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1040.1
(1068 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29090.1 | Ribonuclease H-like superfamily protein | Chr4:143... 179 3e-47
AT3G24255.5 | RNA-directed DNA polymerase (reverse transcriptase... 112 3e-25
AT3G24255.4 | RNA-directed DNA polymerase (reverse transcriptase... 112 3e-25
AT3G24255.7 | RNA-directed DNA polymerase (reverse transcriptase... 109 5e-24
AT1G43760.1 | DNAse I-like superfamily protein | Chr1:16528880-1... 107 2e-23
>AT4G29090.1 | Ribonuclease H-like superfamily protein |
Chr4:14333528-14335255 FORWARD LENGTH=575 | 201606
Length = 575
Score = 179 bits (454), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 149/557 (26%), Positives = 258/557 (46%), Gaps = 62/557 (11%)
Query: 543 AVPRYQMQCFAIPKGISNRIETIQRSFWW---GKTKSIHTINWAAICRPRKFRGLGLRNP 599
A+P Y M CF +PK + +I ++ FWW + K +H W + + G+G ++
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61
Query: 600 LLDNEAFLCKLGWRLLKFPDAPWAQLLKAKYFPKSAKPSSPKQNH-SWVWKSL---AEPI 655
N A L K WR+L P++ A++ K++YF KS ++P + S+VWKS+ E +
Sbjct: 62 EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121
Query: 656 GKTSNLIFWDVNKGTKISIWDDFWIPNHK----------PPIPNLNNCPFNTVDHLI--S 703
+ + + V G I IW W+ + PP + V LI S
Sbjct: 122 RQGARAV---VGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDES 178
Query: 704 NNSWNADLLQIYFNEEICRAILSINLHPSAE---DAMVWPLTKSGNFTIKSMYRYLS--- 757
W D++++ F E+ R ++ L P D+ W T SG++T+KS Y L+
Sbjct: 179 GREWRKDVIEMLF-PEVERKLIG-ELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQII 236
Query: 758 -------NGNRDSDNIEWFFIWNIRTIPRIKLFLWKCCTNSLPVKDKIG-KYIGNSYRCA 809
+ S N + IW +T P+I+ FLWKC +NSLPV + +++ C
Sbjct: 237 NKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACI 296
Query: 810 FCEE-RETLTHVLLHCNFARAIWFHFNIR-------TDGVASVLEWIMFWPSLD---ETT 858
C +ET+ H+L C FAR W +I D + L W+ + + E
Sbjct: 297 RCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEKA 356
Query: 859 TAFLAKIMWFIWKARCDQCFGKTDILPMQVIRKIQCYTTSIHDERNPKSKATPP------ 912
+ + ++W +WK R + F + +V+R+ + +S T P
Sbjct: 357 SQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSS 416
Query: 913 --KWLPPPQSFLKINVDASFSKYTDPAGIGCIIHDENGDFIIAKAETV-RGQTAEECECL 969
+W PPP ++K N DA++++ + GIG ++ +E G+ A + + ++ E E
Sbjct: 417 CGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELE 476
Query: 970 AILKAVQWAKELNISHLIIESDNNNLINHIQDRNKDINWQSLH-HMEHIRALCTNFEQIQ 1028
A+ AV +++I ESD+ LI + N D W SL ++ ++ L + F +++
Sbjct: 477 AMRWAVLSLSRFQYNYVIFESDSQVLIEIL---NNDEIWPSLKPTIQDLQRLLSQFTEVK 533
Query: 1029 FHYGPRKINILADALAK 1045
F + PR+ N LA+ +A+
Sbjct: 534 FVFIPREGNTLAERVAR 550
>AT3G24255.5 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 179/440 (40%), Gaps = 43/440 (9%)
Query: 420 INHLLFADDCIIFGRNTLDNIINLINILTLFGSESGQIINYNKSTIFFSKNTHPKFKRLI 479
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 480 TKSLKVHQASSLDKYLGTKLFIGAKKKQAFESLLDQIQHKLSKWQTNLLSQAGRTVVIST 539
S + +YLG L + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 540 ITAAVPRYQMQCFAIPKGISNRIETIQRSFWWG----KTKSIHTINWAAICRPRKFRGLG 595
+ ++ + M F +P I++I SF W TK + W+ +C P+ GLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLG 185
Query: 596 LRNPLLDNEAFLCKLGWRLLKFPDAPWAQLLKAKYFPKSA--KPSSPKQNHSWVWKSLAE 653
+R+ N+ L KL WR+L + W Q L+ K + S SW+WK + +
Sbjct: 186 IRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 654 PIGKTSNLIFWDVNKGTKISIWDDFW--------IPNHKPPIPNLNNCPFNTVDHLISNN 705
S + D++ G+ S W D W + H+ I ++ +V + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNH 303
Query: 706 S----WNADLLQIYFNEEICRAILSINLHPSAEDAMVWPLTKSGN-------FTIKSMYR 754
+ LL+I E++ + L S ED + W GN F K +
Sbjct: 304 RPRRHRHDTLLRI---EDVIAEVRHQGL-TSGEDTVRWK----GNGDIFKPCFNTKETW- 354
Query: 755 YLSNGNRDSDNIEWF-FIWNIRTIPRIKLFLWKCCTNSLPVKDKIGKY-IGNSYRCAFCE 812
+ + W+ +W P+ + W N L D++ + G C C
Sbjct: 355 --AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH 412
Query: 813 ER-ETLTHVLLHCNFARAIW 831
ET H+ C ++ +W
Sbjct: 413 HLVETRDHLFFTCPYSAEVW 432
>AT3G24255.4 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8790907 FORWARD LENGTH=532 | 201606
Length = 532
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 108/440 (24%), Positives = 179/440 (40%), Gaps = 43/440 (9%)
Query: 420 INHLLFADDCIIFGRNTLDNIINLINILTLFGSESGQIINYNKSTIFFSKNTHPKFKRLI 479
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 480 TKSLKVHQASSLDKYLGTKLFIGAKKKQAFESLLDQIQHKLSKWQTNLLSQAGRTVVIST 539
S + +YLG L + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 540 ITAAVPRYQMQCFAIPKGISNRIETIQRSFWWG----KTKSIHTINWAAICRPRKFRGLG 595
+ ++ + M F +P I++I SF W TK + W+ +C P+ GLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLG 185
Query: 596 LRNPLLDNEAFLCKLGWRLLKFPDAPWAQLLKAKYFPKSA--KPSSPKQNHSWVWKSLAE 653
+R+ N+ L KL WR+L + W Q L+ K + S SW+WK + +
Sbjct: 186 IRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 654 PIGKTSNLIFWDVNKGTKISIWDDFW--------IPNHKPPIPNLNNCPFNTVDHLISNN 705
S + D++ G+ S W D W + H+ I ++ +V + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNH 303
Query: 706 S----WNADLLQIYFNEEICRAILSINLHPSAEDAMVWPLTKSGN-------FTIKSMYR 754
+ LL+I E++ + L S ED + W GN F K +
Sbjct: 304 RPRRHRHDTLLRI---EDVIAEVRHQGL-TSGEDTVRWK----GNGDIFKPCFNTKETW- 354
Query: 755 YLSNGNRDSDNIEWF-FIWNIRTIPRIKLFLWKCCTNSLPVKDKIGKY-IGNSYRCAFCE 812
+ + W+ +W P+ + W N L D++ + G C C
Sbjct: 355 --AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH 412
Query: 813 ER-ETLTHVLLHCNFARAIW 831
ET H+ C ++ +W
Sbjct: 413 HLVETRDHLFFTCPYSAEVW 432
>AT3G24255.7 | RNA-directed DNA polymerase (reverse
transcriptase)-related family protein |
Chr3:8789309-8793208 FORWARD LENGTH=828 | 201606
Length = 828
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 179/441 (40%), Gaps = 43/441 (9%)
Query: 420 INHLLFADDCIIFGRNTLDNIINLINILTLFGSESGQIINYNKSTIFFSKNTHPKFKRLI 479
I HL FADD ++F +I ++ I F SG I+ KSTI+ + K I
Sbjct: 8 ITHLCFADDLLVFTDGKKSSIEGILQIFGKFADFSGLQISLEKSTIYMA-GVKDNDKADI 66
Query: 480 TKSLKVHQASSLDKYLGTKLFIGAKKKQAFESLLDQIQHKLSKWQTNLLSQAGRTVVIST 539
S + +YLG L + L+++I+ ++ KW LS AGR +IS+
Sbjct: 67 LHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISS 126
Query: 540 ITAAVPRYQMQCFAIPKGISNRIETIQRSFWWG----KTKSIHTINWAAICRPRKFRGLG 595
+ ++ + M F +P I++I SF W TK + W+ +C P+ GLG
Sbjct: 127 VIHSLTNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKA-KVAWSDVCTPKDEGGLG 185
Query: 596 LRNPLLDNEAFLCKLGWRLLKFPDAPWAQLLKAKYFPKSA--KPSSPKQNHSWVWKSLAE 653
+R+ N+ L KL WR+L + W Q L+ K + S SW+WK + +
Sbjct: 186 IRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISGNTTLGSWMWKKILK 244
Query: 654 PIGKTSNLIFWDVNKGTKISIWDDFW--------IPNHKPPIPNLNNCPFNTVDHLISNN 705
S + D++ G+ S W D W + H+ I ++ +V + N+
Sbjct: 245 HRALASGFVKHDIHNGSNTSFWFDNWSKIGRLIDVTGHRGCI-DMGITLHASVAEAVVNH 303
Query: 706 S----WNADLLQIYFNEEICRAILSINLHPSAEDAMVWPLTKSGN-------FTIKSMYR 754
+ LL+I E++ + L S ED + W GN F K +
Sbjct: 304 RPRRHRHDTLLRI---EDVIAEVRHQGL-TSGEDTVRWK----GNGDIFKPCFNTKETW- 354
Query: 755 YLSNGNRDSDNIEWF-FIWNIRTIPRIKLFLWKCCTNSLPVKDKIGKY-IGNSYRCAFCE 812
+ + W+ +W P+ + W N L D++ + G C C
Sbjct: 355 --AATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTTGDRMLSWNAGADSSCVLCH 412
Query: 813 ER-ETLTHVLLHCNFARAIWF 832
ET H+ C ++ + F
Sbjct: 413 HLVETRDHLFFTCPYSAEVPF 433
>AT1G43760.1 | DNAse I-like superfamily protein |
Chr1:16528880-16531065 REVERSE LENGTH=626 | 201606
Length = 626
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 121/242 (50%), Gaps = 14/242 (5%)
Query: 36 NKKVFGHVEQKIKNLTSLIQSTQ-----NP-ETLLQLMSQLEEVYNL----QESIWKEKS 85
N++ FG+++ K K ++S Q NP ++L ++ + +N ES +++KS
Sbjct: 380 NRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAALESFYRQKS 439
Query: 86 RVAHVQLGDRNTKYIHAKAITRNRKNYISSIKRDDNSWCSDTSEIFNIFTLNLRNISSTT 145
R+ +Q GD NT++ H + KN I ++ DD+ + +++ + ++ +
Sbjct: 440 RIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVAYYTHLLGSD 499
Query: 146 SQV----SPGIIKNLFTTQISVSQNTILTAAPNDEEIRTATFSLKPEAAPGPDGYPPFFY 201
S + S IK++ + + + + L+A P+D+EI A F++ APGPD + F+
Sbjct: 500 SDILTPDSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFF 559
Query: 202 QSNWDTVKTDIIQMVRSFFQSSLLPPSTNHTCICLIPKTKSPQSTADFRPISLLNTTYKI 261
+W VK I V+ FF++ L N T I LIPK + FRP+S YKI
Sbjct: 560 WESWFVVKDSTIAAVKEFFRTGHLLKRFNATAITLIPKVTGVDQLSMFRPVSCCTVVYKI 619
Query: 262 IT 263
IT
Sbjct: 620 IT 621