BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1050.1
(339 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36228.1 | nucleic acid binding / zinc ion binding protein | ... 45 4e-05
>AT5G36228.1 | nucleic acid binding / zinc ion binding protein |
Chr5:14271691-14272776 FORWARD LENGTH=361 | 201606
Length = 361
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Query: 83 VLNALNAGRPWIMRGRLLVLKQV-DFPLNEGVDDLFYEPMWCTLYKLPLAIQNKEDLDVI 141
+LN L PW+ + L++ DFP D L + +W + +PL ++ +++I
Sbjct: 88 LLNGLRRA-PWVFNEWFIALQRWEDFPTE---DFLTFIDVWVHIRGIPLPYVSERTVEII 143
Query: 142 FERMGKIIEIKPRSLGFINNKVIKVHFLYDIRTPLLAVINLLFVDKE-CNINISYQKFPG 200
+G+++ + I+V D PL + F +E I Y+K
Sbjct: 144 ASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRRVRFASRERAMIGFEYEKLQ- 202
Query: 201 AICHSCRIIEHPLGHCPDQAPEPQSDEDDD 230
+C +C + H + HCP + + D + D
Sbjct: 203 RVCTNCCRVNHQVSHCPYVVHQEEMDNEPD 232