BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1060.1
(112 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19260.1 | TTF-type zinc finger protein with HAT dimerization... 54 3e-09
AT3G29765.1 | General transcription factor 2-related zinc finger... 53 5e-09
AT2G06541.1 | TTF-type zinc finger protein with HAT dimerization... 50 6e-08
AT2G06541.2 | TTF-type zinc finger protein with HAT dimerization... 46 1e-06
>AT1G19260.1 | TTF-type zinc finger protein with HAT dimerization
domain-containing protein | Chr1:6657260-6659569 REVERSE
LENGTH=769 | 201606
Length = 769
Score = 53.5 bits (127), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 54 ATVERSFSAMDIFKSQLRNRMSDEWLSDSMLAYIENDISMEIDNKIIMRNFQAMKTLR 111
ATVER FSAM+ K+ LRNR+ D +LSD ++ +IE + N+ +++ FQ M R
Sbjct: 709 ATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCFIEKQALNTVTNESVIKRFQDMSERR 766
>AT3G29765.1 | General transcription factor 2-related zinc finger
protein | Chr3:11595467-11597077 REVERSE LENGTH=536 |
201606
Length = 536
Score = 52.8 bits (125), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 54 ATVERSFSAMDIFKSQLRNRMSDEWLSDSMLAYIENDISMEIDNKIIMRNFQAMKTLR 111
ATV R FSAM+ K+ LRNR D +LSD ++ +IE + + N+ +++ FQ M R
Sbjct: 476 ATVVRCFSAMNFVKTTLRNRFGDVFLSDCLVCFIEKQVLNTVTNESVIKRFQDMSERR 533
>AT2G06541.1 | TTF-type zinc finger protein with HAT dimerization
domain-containing protein | Chr2:2598222-2600326 REVERSE
LENGTH=592 | 201606
Length = 592
Score = 49.7 bits (117), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 54 ATVERSFSAMDIFKSQLRNRMSDEWLSDSMLAYIENDISMEIDNKIIMRNFQAM 107
ATVER FSA + K+ LRNR+SD++L+D ++ ++ ++ + NK++++ FQ+M
Sbjct: 533 ATVERCFSAT-VVKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSM 585
>AT2G06541.2 | TTF-type zinc finger protein with HAT dimerization
domain-containing protein | Chr2:2598222-2600326 REVERSE
LENGTH=564 | 201606
Length = 564
Score = 45.8 bits (107), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 54 ATVERSFSAMDIFKSQLRNRMSDEWLSDSMLAYIENDISMEIDNKIIMRNFQAMK 108
ATVER FSA + K+ LRNR+SD++L+D ++ ++ ++ + NK++++ FQ+M+
Sbjct: 505 ATVERCFSAT-VVKTTLRNRISDQFLNDYVVCLVKRELFDTVINKVVIKRFQSME 558