BLAST Resut 
BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Eca_sc000117.1_g1080.1
         (85 letters)

Database: Araport11_genes.201606.pep 
           48,359 sequences; 20,855,782 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447...    57   3e-11

>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
          Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
          Length = 237

 Score = 57.4 bits (137), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 8  DVHHSDSPTTVLITPLLS-GDNYTSWSRWMKMVIRPKDKLGFVDGTIPKPSSHSDLHA-W 65
          D+HH   P+   I  L    DNY +W    +  +R   K GF+DGT+PKP   S L+  W
Sbjct: 23 DIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPW 79

Query: 66 ERCNDLVASWLVN 78
          E+CN +V  WL+N
Sbjct: 80 EQCNAMVMYWLMN 92

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