BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1220.1
(296 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G21280.1 | Copia-like polyprotein/retrotransposon | Chr1:7447... 125 3e-34
AT5G48050.1 | Copia-like polyprotein/retrotransposon | Chr5:1947... 48 6e-06
AT1G34070.1 | Copia-like polyprotein/retrotransposon | Chr1:1240... 46 2e-05
>AT1G21280.1 | Copia-like polyprotein/retrotransposon |
Chr1:7447690-7448403 REVERSE LENGTH=237 | 201606
Length = 237
Score = 125 bits (313), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 11 VLPTSQSPSPLF---DVHHSDSPTTILITPLLSG-DNYPSWSRARKMALRAKDKFAFVDG 66
V PTS SP + D+HH P+ I L DNY +W + LR KF F+DG
Sbjct: 8 VSPTSDPDSPYYLPPDIHH---PSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDG 64
Query: 67 SLPRPTNPSELHS-WNRCNDLVTSWLLNSVNPDIRQAILYDENAAEIWSNLHERFHQTNA 125
+LP+P S L+ W +CN +V WL+NS+ + ++++Y E A ++W +L F
Sbjct: 65 TLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVD 124
Query: 126 PKIFQLKRAIAYLKQDGSDVSAYFTRLKSIQDELNSLISIEPCICGH-----GKFLFERY 180
KI+QL+R +A L+Q G V YF +L + EL+ I C CG K E
Sbjct: 125 LKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAR 184
Query: 181 NQDRAMEFLQG--LHDRFSSIRSQILLMEPFPSLLRIHSLVKQEE 223
+++ EFL G L+ F ++ ++I+ +P PSL ++VK E
Sbjct: 185 EKEQRYEFLMGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAE 229
>AT5G48050.1 | Copia-like polyprotein/retrotransposon |
Chr5:19472661-19473770 REVERSE LENGTH=369 | 201606
Length = 369
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 20/194 (10%)
Query: 33 ILITPLLSGDNYPSWSRARKMALRAKDKFAFVDGSLPRPTNPSELHSWNRCNDLVTSWLL 92
I +T L+ NY W + + +DGS PT P W + LV W+
Sbjct: 22 IFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGS-STPT-PMTEKRWKERDGLVKMWIY 79
Query: 93 NSVNPDIRQAIL-YDENAAEIWSNLHERFHQTNAPKIFQLKRAIAYLKQDGSDVSAYFTR 151
++ + I+ A ++W +L F + Q + + D V Y +
Sbjct: 80 GTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQK 139
Query: 152 LKSIQDELNSLISIEPCICGHGKFLFERYNQDRA--MEFLQGLHDRFSSIRSQILLMEPF 209
LKS+ D L ++ S P DR M L GL +++ I + I PF
Sbjct: 140 LKSLSDLLTNVDS--PI-------------SDRVLVMHLLNGLTEKYDYILNVIKHKSPF 184
Query: 210 PSLLRIHSLVKQEE 223
PS S++ EE
Sbjct: 185 PSFTEARSMLLMEE 198
>AT1G34070.1 | Copia-like polyprotein/retrotransposon |
Chr1:12402283-12403209 FORWARD LENGTH=308 | 201606
Length = 308
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/208 (19%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 17 SPSPLFDVHHSDSPTTILITPLLSGDNYPSWSRARKMALRAKDKFAFVDGSLPRPTNPSE 76
+P ++ V + S +++ + NY +W + D +DG+L PTN ++
Sbjct: 6 NPEQIYGVSNIKSHIPVMLD--IEESNYDAWRELFLTHCLSFDVMGHIDGTL-LPTNAND 62
Query: 77 LHSWNRCNDLVTSWLLNSVNP-DIRQAILYDENAAEIWSNLHERFHQTNAPKIFQLKRAI 135
++ W + + +V L ++ P + + + + +IW + +F + +L +
Sbjct: 63 VN-WQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSEL 121
Query: 136 AYLKQDGSDVSAYFTRLKSIQDELNSLISIEPCICGHGKFLFERYNQDRAMEFLQGLHDR 195
V+ Y+ ++K + D SL +++ + +++ M L GL+ +
Sbjct: 122 RTKDIGDMRVADYYRKMKKLAD---SLRNVDVPVT----------DRNLVMYVLNGLNPK 168
Query: 196 FSSIRSQILLMEPFPSLLRIHSLVKQEE 223
F +I + I +PFPS +++++EE
Sbjct: 169 FDNIINVIKHRQPFPSFDDAATMLQEEE 196