BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1230.1
(471 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G23160.3 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 52 8e-07
AT4G23160.2 | cysteine-rich RECEPTOR-like kinase | Chr4:12129485... 52 8e-07
ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like... 47 3e-06
>AT4G23160.3 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 381 RRPVHLNDYICNVLPTIDSSRSIPYPLTNYISYNSLSNNHRHFIASVLSHTEPRSYSQAM 440
R+P +L DY C+ + ++ + ++ ++SY +S + F+ + EP +Y++A
Sbjct: 39 RKPAYLQDYYCHSVASL-----TIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAK 93
Query: 441 TSPQWREAMAKEIKALECNKTWTLVDLPQGK 471
W AM EI A+E TW + LP K
Sbjct: 94 EFLVWCGAMDDEIGAMETTHTWEICTLPPNK 124
>AT4G23160.2 | cysteine-rich RECEPTOR-like kinase |
Chr4:12129485-12133157 FORWARD LENGTH=1043 | 201606
Length = 1043
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 381 RRPVHLNDYICNVLPTIDSSRSIPYPLTNYISYNSLSNNHRHFIASVLSHTEPRSYSQAM 440
R+P +L DY C+ + ++ + ++ ++SY +S + F+ + EP +Y++A
Sbjct: 39 RKPAYLQDYYCHSVASL-----TIHDISQFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAK 93
Query: 441 TSPQWREAMAKEIKALECNKTWTLVDLPQGK 471
W AM EI A+E TW + LP K
Sbjct: 94 EFLVWCGAMDDEIGAMETTHTWEICTLPPNK 124
>ATMG00710.1 | Polynucleotidyl transferase%2C ribonuclease H-like
superfamily protein | ChrM:207553-207915 REVERSE
LENGTH=120 | 201606
Length = 120
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 212 HRHNLEVARSLRLQAHLPDLEFWGECVLTAVYIINKLPTPLLRGASPHEKLLGTPPSLTH 271
+R +E RS+ + LP F + TAV+IINK P+ + P E + P+ ++
Sbjct: 2 NRTIIEKVRSMLCECGLPK-TFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSY 60
Query: 272 LRVFGCLCYARNHSPKNKLEPSTR 295
LR FGC+ Y H + KL+P +
Sbjct: 61 LRRFGCVAYI--HCDEGKLKPRAK 82