BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1350.1
(83 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38760.1 | Late embryogenesis abundant protein (LEA) family p... 70 1e-17
AT5G53820.1 | Late embryogenesis abundant protein (LEA) family p... 70 1e-17
AT3G02480.1 | Late embryogenesis abundant protein (LEA) family p... 53 7e-11
AT1G52680.1 | late embryogenesis abundant protein-related / LEA ... 51 1e-09
>AT5G38760.1 | Late embryogenesis abundant protein (LEA) family
protein | Chr5:15524249-15524743 FORWARD LENGTH=67 |
201606
Length = 67
Score = 70.5 bits (171), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 17/80 (21%)
Query: 4 SQSMSYNAGQAKGQAEVKKDQMMDKASNAMQSAKESCQQVDIDLENPTSINLNVTRAGQQ 63
SQ++S+ AGQAKGQ + K MMDKASNA QSAKES ++ GQQ
Sbjct: 5 SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKET-----------------GQQ 47
Query: 64 MKEKAQGAADAVKDATGMKK 83
+KEKAQGA ++VK+ATGM K
Sbjct: 48 IKEKAQGATESVKNATGMNK 67
>AT5G53820.1 | Late embryogenesis abundant protein (LEA) family
protein | Chr5:21853475-21853866 FORWARD LENGTH=67 |
201606
Length = 67
Score = 70.1 bits (170), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 17/82 (20%)
Query: 2 DQSQSMSYNAGQAKGQAEVKKDQMMDKASNAMQSAKESCQQVDIDLENPTSINLNVTRAG 61
+ SQSMS+NAGQAKGQ + K ++DKASNA QSAKES Q+ G
Sbjct: 3 NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQE-----------------GG 45
Query: 62 QQMKEKAQGAADAVKDATGMKK 83
QQ+K+KAQGA++ +K+ TG+ K
Sbjct: 46 QQLKQKAQGASETIKEKTGISK 67
>AT3G02480.1 | Late embryogenesis abundant protein (LEA) family
protein | Chr3:512384-512857 FORWARD LENGTH=68 | 201606
Length = 68
Score = 53.1 bits (126), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 48/83 (57%), Gaps = 17/83 (20%)
Query: 1 MDQSQSMSYNAGQAKGQAEVKKDQMMDKASNAMQSAKESCQQVDIDLENPTSINLNVTRA 60
MD Q+ SY AGQA GQ + K MMDKA +A SA++S QQ
Sbjct: 1 MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQT----------------- 43
Query: 61 GQQMKEKAQGAADAVKDATGMKK 83
GQQMKEKAQGAAD VKD TGM K
Sbjct: 44 GQQMKEKAQGAADVVKDKTGMNK 66
>AT1G52680.1 | late embryogenesis abundant protein-related / LEA
protein-like protein | Chr1:19618419-19618961 REVERSE
LENGTH=114 | 201606
Length = 114
Score = 51.2 bits (121), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 9/90 (10%)
Query: 1 MDQSQSMSYNAGQAKGQAEVKKDQMMDKASNAM------QSAKESCQQVDIDLENPTSIN 54
M SQ +S++AG+ GQ ++KK++ ++ S+AM + +S + D NP+ I+
Sbjct: 1 MSSSQQLSHSAGEVTGQVQLKKEEYLNNVSHAMNQNADHHTHSQSQLHSEHDQNNPSLIS 60
Query: 55 LN---VTRAGQQMKEKAQGAADAVKDATGM 81
+ + G Q+K AQGAADAVK+ GM
Sbjct: 61 QASSVIQQTGGQVKNMAQGAADAVKNTLGM 90