BLAST Resut
BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Eca_sc000117.1_g1370.1
(287 letters)
Database: Araport11_genes.201606.pep
48,359 sequences; 20,855,782 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38720.1 | ribosomal RNA-processing 7 protein | Chr5:15508417... 224 3e-72
AT5G38720.3 | ribosomal RNA-processing 7 protein | Chr5:15508417... 224 3e-72
AT5G38720.2 | ribosomal RNA-processing 7 protein | Chr5:15508417... 223 3e-71
>AT5G38720.1 | ribosomal RNA-processing 7 protein |
Chr5:15508417-15510472 REVERSE LENGTH=306 | 201606
Length = 306
Score = 224 bits (572), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 131/149 (87%), Gaps = 1/149 (0%)
Query: 140 EVYHISSGDEDCSRGMKKWVTEYHQNRPGLEILQEKIDEFISAHEEREEQERKEREARVA 199
+VY ISSGDEDC+RGMKKWV++Y++ RPGL+ LQ++ID+F++AHEER EQE++++EA+ A
Sbjct: 158 DVYQISSGDEDCTRGMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA 217
Query: 200 EGGWTVVQHHKGRKKTTDSESGITVGSVAQAAVIDKMAKKKNKE-VGIDFYRFQRREARM 258
EGGWTVV HHKGRKKTT+SE+G VGS +QAA+ DK+AKKK E V FYRFQRR+A+
Sbjct: 218 EGGWTVVVHHKGRKKTTESETGTAVGSFSQAALEDKIAKKKQSEPVAHGFYRFQRRDAQR 277
Query: 259 NEVMMLQSKFEQDRKRIQQLRAARKFRPY 287
NE++ LQSKFE+D+KRIQQLRAAR+F+P+
Sbjct: 278 NELLALQSKFEEDKKRIQQLRAARRFKPF 306
>AT5G38720.3 | ribosomal RNA-processing 7 protein |
Chr5:15508417-15510472 REVERSE LENGTH=313 | 201606
Length = 313
Score = 224 bits (572), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 131/149 (87%), Gaps = 1/149 (0%)
Query: 140 EVYHISSGDEDCSRGMKKWVTEYHQNRPGLEILQEKIDEFISAHEEREEQERKEREARVA 199
+VY ISSGDEDC+RGMKKWV++Y++ RPGL+ LQ++ID+F++AHEER EQE++++EA+ A
Sbjct: 165 DVYQISSGDEDCTRGMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA 224
Query: 200 EGGWTVVQHHKGRKKTTDSESGITVGSVAQAAVIDKMAKKKNKE-VGIDFYRFQRREARM 258
EGGWTVV HHKGRKKTT+SE+G VGS +QAA+ DK+AKKK E V FYRFQRR+A+
Sbjct: 225 EGGWTVVVHHKGRKKTTESETGTAVGSFSQAALEDKIAKKKQSEPVAHGFYRFQRRDAQR 284
Query: 259 NEVMMLQSKFEQDRKRIQQLRAARKFRPY 287
NE++ LQSKFE+D+KRIQQLRAAR+F+P+
Sbjct: 285 NELLALQSKFEEDKKRIQQLRAARRFKPF 313
>AT5G38720.2 | ribosomal RNA-processing 7 protein |
Chr5:15508417-15510350 REVERSE LENGTH=325 | 201606
Length = 325
Score = 223 bits (567), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 131/149 (87%), Gaps = 1/149 (0%)
Query: 140 EVYHISSGDEDCSRGMKKWVTEYHQNRPGLEILQEKIDEFISAHEEREEQERKEREARVA 199
+VY ISSGDEDC+RGMKKWV++Y++ RPGL+ LQ++ID+F++AHEER EQE++++EA+ A
Sbjct: 177 DVYQISSGDEDCTRGMKKWVSDYYEGRPGLDELQKRIDDFMTAHEERLEQEKQDKEAKAA 236
Query: 200 EGGWTVVQHHKGRKKTTDSESGITVGSVAQAAVIDKMAKKKNKE-VGIDFYRFQRREARM 258
EGGWTVV HHKGRKKTT+SE+G VGS +QAA+ DK+AKKK E V FYRFQRR+A+
Sbjct: 237 EGGWTVVVHHKGRKKTTESETGTAVGSFSQAALEDKIAKKKQSEPVAHGFYRFQRRDAQR 296
Query: 259 NEVMMLQSKFEQDRKRIQQLRAARKFRPY 287
NE++ LQSKFE+D+KRIQQLRAAR+F+P+
Sbjct: 297 NELLALQSKFEEDKKRIQQLRAARRFKPF 325